mRNA_Ecto-sp8_S_contig10611.965.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10611.965.1
Unique NamemRNA_Ecto-sp8_S_contig10611.965.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10611.965.1 vs. uniprot
Match: A0A6H5JCV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV8_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.150e-77
Identity = 209/340 (61.47%), Postives = 212/340 (62.35%), Query Frame = 1 
Query:   31 DGLSFSPALNALASSPGNSXXXXXXXXXXXXXXXXXXXXXXXSSIKAEPRSTNPIRGGSGAGSEAEASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGKASAPARSNDELEGMLSLRRGKESSPSTRVLSSDLTDTTDMADLLSGIEPGVDAALLDFMMCDNDNTPVLGAAAPPAEPPTLNXXXXXXXXXXXQPWVFSSPFSPTMEPVIPSVNGATSETSPTKKRRASEDCSSSVPAAAGRMSAGSTDAAANSDNKNSGDGRTASPSMMWSRVGSAPNLTNLSCRIQA-----HSRGQQXXXXXXXXXXXXXXXXXXXXXRCSVAISNGGTSK 1035
            DGLSF P LNALASSPG+S                       S IKAEPRSTNPIRGGSGA        XXXX                             SSGKASAPARSNDELEGML  RRGKES    RVLSSD+ DTTDMADLLSGIEPGVDA                                         PWV S PFSPTMEPVIPS NGATS TSPTKKRR SED SS VPAAAGRMSAGSTDAAANSDN NSGDGRTASPSM+WSRVGSAPNLTNLS  IQA     HSRGQQXXXXXXXXXXXXXXXXXXX  RCSVAISNGGTSK
Sbjct:  103 DGLSFPPTLNALASSPGSSNGNNINSRTAPGTGGG-------SGIKAEPRSTNPIRGGSGAXXXXXXXXXXXXSSEARSGTSSLLSSPTMADATSSGG----SSGKASAPARSNDELEGMLFRRRGKES----RVLSSDVADTTDMADLLSGIEPGVDA-----------------------------------------PWVVSGPFSPTMEPVIPSCNGATSGTSPTKKRRVSEDRSSCVPAAAGRMSAGSTDAAANSDNNNSGDGRTASPSMIWSRVGSAPNLTNLSFSIQATLPSAHSRGQQXXXXXXXXXXXXXXXXXXX--RCSVAISNGGTSK 384
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10611.965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCV8_9PHAE2.150e-7761.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10611contigEcto-sp8_S_contig10611:4821..6771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1230
Hectar predicted targeting categoryother localisation
Exons3
Cds size1230
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.2083976-CDS-Ecto-sp8_S_contig10611:4820..55431681143159.2083976-CDS-Ecto-sp8_S_contig10611:4820..5543Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10611 4821..5543 -
1681143159.2181118-CDS-Ecto-sp8_S_contig10611:5975..60661681143159.2181118-CDS-Ecto-sp8_S_contig10611:5975..6066Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10611 5976..6066 -
1681143159.226487-CDS-Ecto-sp8_S_contig10611:6355..67711681143159.226487-CDS-Ecto-sp8_S_contig10611:6355..6771Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10611 6356..6771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10611.965.1prot_Ecto-sp8_S_contig10611.965.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10611 4821..6771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10611.965.1

>prot_Ecto-sp8_S_contig10611.965.1 ID=prot_Ecto-sp8_S_contig10611.965.1|Name=mRNA_Ecto-sp8_S_contig10611.965.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=410bp
SSGGGGGGGGDGLSFSPALNALASSPGNSNGNNINSRTAAAAVAATPGVG
GGSSIKAEPRSTNPIRGGSGAGSEAEASAAGGGSSEARSGTSSLLLPPTM
ADATSGGGGGGVSSGKASAPARSNDELEGMLSLRRGKESSPSTRVLSSDL
TDTTDMADLLSGIEPGVDAALLDFMMCDNDNTPVLGAAAPPAEPPTLNIQ
QQQPQQQQQQPWVFSSPFSPTMEPVIPSVNGATSETSPTKKRRASEDCSS
SVPAAAGRMSAGSTDAAANSDNKNSGDGRTASPSMMWSRVGSAPNLTNLS
CRIQAHSRGQQQQQQLQPASSSATATTSAPRPRCSVAISNGGTSKKQSMT
GRPPSGAVVNRGGGGNLQMQQAVGGGGGVSGGSPSNSTGGSEKNSSSSSS
SSSSSSNNAM
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mRNA from alignment at Ecto-sp8_S_contig10611:4821..6771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10611.965.1 ID=mRNA_Ecto-sp8_S_contig10611.965.1|Name=mRNA_Ecto-sp8_S_contig10611.965.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1951bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10611:4821..6771- (Ectocarpus species8 EcLAC_412)
AGTAGCGGCGGCGGCGGCGGCGGCGGCGGGGACGGTTTGTCCTTCTCCCC
TGCCTTGAACGCCTTGGCCTCGTCCCCGGGAAATAGCAACGGCAATAACA
TCAACAGCCGCACGGCGGCGGCGGCTGTGGCGGCGACGCCGGGTGTAGGT
GGCGGCAGCAGCATCAAGGCCGAACCGCGGTCGACGAACCCAATCCGCGG
TGGCTCCGGTGCCGGGAGCGAGGCCGAGGCATCCGCGGCTGGGGGGGGGA
GTTCTGAAGCAAGGAGCGGTACCTCGTCCCTGCTCTTGCCTCCCACGATG
GCGGACGCGACCTCTGGTGGTGGCGGTGGTGGTGTCAGTAGCGGCAAGGC
TTCAGCACCCGCAAGAAGCAACGACGAGCTGGAGGGGATGCTATCTCTTA
GGCGAGGAAAAGAGAGGTGGAGTGTGTGTCACAGGAGTGGCTAAAGACTA
CATATAACCCTCAACCGTTGTCTTCTGGCCTGGCCGGACCACCCGACGGC
GTGTGCTTGTTTATTTCCGTCGCATGCCCCCCCCCCCTTAAGCTTGGACG
TATGGTAGAGAAATTACGCGCGCGGCCCCCCCCCCTCCCCTGTAGCGCCT
TTGCCACCTCGTTGTTTGAACTGTTGCCTCGACAAACCGGGTACGCCCAA
CGTGAATACGCCCCTCCCTGCACTATGAAACCTCTCTCACGACAAACGCT
TCCAGCTCTCCCAGCACCCGCGTGCTGTCGTCGGACCTCACAGACACCAC
GGACATGGCGGACCTCCTGTCCGGCATCGAGCCCGGCGTAGATGCTGTAA
GTTCGGTTCGGCGTCCCATGACACTCACACCGCCTCATCCCGTTCCTACG
ATTTCCCGTCCCGCAGAGACGCCTATTCTTCTGGCTGACGACCCTCACGC
GCGTTTGTTTTTCCGGGTCAACTACGTACACACGCCGCGCGGCGTTTTCT
TGCGGTGCCACGAATCGACTGCATGCCGCGCGTAATTTGTTGTGAAAATG
CGTCTCGTTATCGCCCGGCCTCGTGGCGTAGCACGTCGGCCGCCGTCTCT
GCGGCCGTGGCAAAAACAAACACCCAAGCCGGCCAATGTATTTTGGCGAA
CGTTGGTGGCGTTGTTTTTCCCTCCCGACTGTACTGGAACAGTACATCGT
TTCACAAGCATCCTACCTGATTCCTCCGTCCATTTGTCGTTGTGTCTGTC
TTTATTCTCTCGCCTCTCATCTAACAAGGCCCTCCTTGACTTCATGATGT
GCGACAACGACAACACGCCGGTCCTCGGCGCCGCCGCACCGCCTGCGGAG
CCTCCAACTCTCAACATCCAACAGCAACAACCCCAGCAGCAGCAGCAGCA
GCCGTGGGTGTTTTCCAGCCCGTTTTCTCCGACGATGGAGCCGGTGATTC
CTAGCGTCAACGGGGCGACATCTGAGACGTCCCCAACCAAGAAGAGGCGG
GCATCAGAGGATTGTTCCTCTAGCGTGCCCGCTGCCGCGGGCCGTATGTC
AGCGGGCTCGACCGATGCCGCTGCCAACAGCGACAACAAAAACAGCGGCG
ACGGCAGGACGGCCTCACCCTCGATGATGTGGAGCCGAGTGGGGTCGGCC
CCGAACCTTACCAACTTGTCGTGCCGCATCCAAGCCCACAGCCGAGGGCA
GCAGCAGCAGCAGCAGCTGCAGCCGGCATCGTCTTCGGCTACGGCCACCA
CCTCGGCGCCTCGCCCGCGGTGTAGCGTTGCCATCTCGAACGGCGGCACG
TCGAAGAAGCAGTCGATGACCGGAAGGCCCCCGTCCGGCGCGGTAGTCAA
CCGTGGCGGCGGCGGCAACCTCCAGATGCAGCAAGCCGTGGGGGGGGGGG
GGGGCGTGTCCGGTGGTAGTCCCAGCAACAGCACCGGGGGGAGTGAGAAA
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACGCGAT
G
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10611:4821..6771-

>mRNA_Ecto-sp8_S_contig10611.965.1 ID=mRNA_Ecto-sp8_S_contig10611.965.1|Name=mRNA_Ecto-sp8_S_contig10611.965.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1230bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10611:4821..6771- (Ectocarpus species8 EcLAC_412)
AGTAGCGGCGGCGGCGGCGGCGGCGGCGGGGACGGTTTGTCCTTCTCCCC
TGCCTTGAACGCCTTGGCCTCGTCCCCGGGAAATAGCAACGGCAATAACA
TCAACAGCCGCACGGCGGCGGCGGCTGTGGCGGCGACGCCGGGTGTAGGT
GGCGGCAGCAGCATCAAGGCCGAACCGCGGTCGACGAACCCAATCCGCGG
TGGCTCCGGTGCCGGGAGCGAGGCCGAGGCATCCGCGGCTGGGGGGGGGA
GTTCTGAAGCAAGGAGCGGTACCTCGTCCCTGCTCTTGCCTCCCACGATG
GCGGACGCGACCTCTGGTGGTGGCGGTGGTGGTGTCAGTAGCGGCAAGGC
TTCAGCACCCGCAAGAAGCAACGACGAGCTGGAGGGGATGCTATCTCTTA
GGCGAGGAAAAGAGAGCTCTCCCAGCACCCGCGTGCTGTCGTCGGACCTC
ACAGACACCACGGACATGGCGGACCTCCTGTCCGGCATCGAGCCCGGCGT
AGATGCTGCCCTCCTTGACTTCATGATGTGCGACAACGACAACACGCCGG
TCCTCGGCGCCGCCGCACCGCCTGCGGAGCCTCCAACTCTCAACATCCAA
CAGCAACAACCCCAGCAGCAGCAGCAGCAGCCGTGGGTGTTTTCCAGCCC
GTTTTCTCCGACGATGGAGCCGGTGATTCCTAGCGTCAACGGGGCGACAT
CTGAGACGTCCCCAACCAAGAAGAGGCGGGCATCAGAGGATTGTTCCTCT
AGCGTGCCCGCTGCCGCGGGCCGTATGTCAGCGGGCTCGACCGATGCCGC
TGCCAACAGCGACAACAAAAACAGCGGCGACGGCAGGACGGCCTCACCCT
CGATGATGTGGAGCCGAGTGGGGTCGGCCCCGAACCTTACCAACTTGTCG
TGCCGCATCCAAGCCCACAGCCGAGGGCAGCAGCAGCAGCAGCAGCTGCA
GCCGGCATCGTCTTCGGCTACGGCCACCACCTCGGCGCCTCGCCCGCGGT
GTAGCGTTGCCATCTCGAACGGCGGCACGTCGAAGAAGCAGTCGATGACC
GGAAGGCCCCCGTCCGGCGCGGTAGTCAACCGTGGCGGCGGCGGCAACCT
CCAGATGCAGCAAGCCGTGGGGGGGGGGGGGGGCGTGTCCGGTGGTAGTC
CCAGCAACAGCACCGGGGGGAGTGAGAAAAACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAACGCGATG
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