mRNA_Ecto-sp8_S_contig10568.892.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10568.892.1
Unique NamemRNA_Ecto-sp8_S_contig10568.892.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10568.892.1 vs. uniprot
Match: D7FPK0_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK0_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:   82 LNDEEADEFQGHDIGDAVNAVLKPKRPRR 168
            LNDEEADEFQGHDIGDAVNAVLKPKRPRR
Sbjct: 1210 LNDEEADEFQGHDIGDAVNAVLKPKRPRR 1238
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BLAST of mRNA_Ecto-sp8_S_contig10568.892.1 vs. uniprot
Match: A0A6H5KYC9_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.520e-9
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:   82 LNDEEADEFQGHDIGDAVNAVLKPKRPRR 168
            LNDEEADEFQGHDIGDAVNA+LKPKRPRR
Sbjct: 1007 LNDEEADEFQGHDIGDAVNAILKPKRPRR 1035
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10568.892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPK0_ECTSI1.120e-9100.001,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KYC9_9PHAE1.520e-996.551,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10568contigEcto-sp8_S_contig10568:5026..5297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143154.759884-CDS-Ecto-sp8_S_contig10568:5025..51061681143154.759884-CDS-Ecto-sp8_S_contig10568:5025..5106Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10568 5026..5106 +
1681143154.769249-CDS-Ecto-sp8_S_contig10568:5209..52961681143154.769249-CDS-Ecto-sp8_S_contig10568:5209..5296Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10568 5210..5296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10568.892.1prot_Ecto-sp8_S_contig10568.892.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10568 5026..5296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10568.892.1

>prot_Ecto-sp8_S_contig10568.892.1 ID=prot_Ecto-sp8_S_contig10568.892.1|Name=mRNA_Ecto-sp8_S_contig10568.892.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=56bp
LLRLKKCRNEVWLRMWRPSPPPACWAAAAGSLRLEDRVHGVTNVVALELV
RFLVVE
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mRNA from alignment at Ecto-sp8_S_contig10568:5026..5297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10568.892.1 ID=mRNA_Ecto-sp8_S_contig10568.892.1|Name=mRNA_Ecto-sp8_S_contig10568.892.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=272bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10568:5026..5297+ (Ectocarpus species8 EcLAC_412)
TTGTTGCGGTTGAAGAAGTGCCGGAACGAGGTCTGGCTGCGGATGTGGCG
GCCGTCGCCGCCGCCGGCCTGCTGGGCGGCGGCGGCGGCGTTCGTAGGAG
TGCCGGAGGCATGCCTCTGCCAGAACTTGAGGCGCCAGGCCGCGTCGTCG
CCGCCGCGCCGCCGCCGCCGTCGCCGCTCTCGGTGCGGCGGGGTCGCTTC
GGCTTGAGGACCGCGTTCACGGCGTCACCAATGTCGTGGCCCTGGAACTC
GTCCGCTTCCTCGTCGTTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10568:5026..5297+

>mRNA_Ecto-sp8_S_contig10568.892.1 ID=mRNA_Ecto-sp8_S_contig10568.892.1|Name=mRNA_Ecto-sp8_S_contig10568.892.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10568:5026..5297+ (Ectocarpus species8 EcLAC_412)
TTGTTGCGGTTGAAGAAGTGCCGGAACGAGGTCTGGCTGCGGATGTGGCG
GCCGTCGCCGCCGCCGGCCTGCTGGGCGGCGGCGGCGGGGTCGCTTCGGC
TTGAGGACCGCGTTCACGGCGTCACCAATGTCGTGGCCCTGGAACTCGTC
CGCTTCCTCGTCGTTGAG
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