mRNA_Ecto-sp8_S_contig105121.806.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2V6F4_9MAXI (40S ribosomal protein S12 n=5 Tax=Calanoida TaxID=6833 RepID=A0A0U2V6F4_9MAXI) HSP 1 Score: 251 bits (640), Expect = 6.410e-84 Identity = 124/140 (88.57%), Postives = 133/140 (95.00%), Query Frame = 1
Query: 1 MSDVEGD-VPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
MSDVEGD VPSAA SGPMD+NTAIQEVLKQALIADGLARGLREA KALDKRQALLCIL+ENCDEPMYKKL+TALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSA V+R+WG+E+PAHDVLQEYLK+ +
Sbjct: 1 MSDVEGDDVPSAAAAPSGPMDMNTAIQEVLKQALIADGLARGLREAVKALDKRQALLCILSENCDEPMYKKLITALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSAAVIRNWGQETPAHDVLQEYLKSQR 140
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2T4K3_ACAPC (40S ribosomal protein S12 n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2T4K3_ACAPC) HSP 1 Score: 238 bits (606), Expect = 9.470e-79 Identity = 115/139 (82.73%), Postives = 129/139 (92.81%), Query Frame = 1
Query: 1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
MSDVEGD +A+ ASGPMDINTAIQEVLKQALIADG++RGLRE+AKALD+R+ALLC+L+ENCDEPMYKKLVTALCMEH IPLIKVDSNMKLGEWAGLCKID +GKARKVVKCS VV +WGK++PAHDVLQEYLK+ K
Sbjct: 1 MSDVEGDDVAASAAASGPMDINTAIQEVLKQALIADGMSRGLRESAKALDQRKALLCVLSENCDEPMYKKLVTALCMEHNIPLIKVDSNMKLGEWAGLCKIDADGKARKVVKCSCAVVSNWGKDTPAHDVLQEYLKSQK 139
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2UNA1_ACAPC (40S ribosomal protein S12 n=2 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2UNA1_ACAPC) HSP 1 Score: 238 bits (608), Expect = 2.120e-78 Identity = 116/139 (83.45%), Postives = 129/139 (92.81%), Query Frame = 1
Query: 1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
MSDVEGD +A+ ASGPMDINTAIQEVLKQALIADGL+RGLRE+AKALD+R+ALLC+L+ENCDEPMYKKLVTALCMEH IPLIKVDSNMKLGEWAGLCKID +GKARKVVKCS VV +WGK++PAHDVLQEYLK+ K
Sbjct: 1 MSDVEGDDVAASAAASGPMDINTAIQEVLKQALIADGLSRGLRESAKALDQRKALLCVLSENCDEPMYKKLVTALCMEHNIPLIKVDSNMKLGEWAGLCKIDADGKARKVVKCSCAVVSNWGKDTPAHDVLQEYLKSQK 139
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2TIB2_9MAXI (40S ribosomal protein S12 n=1 Tax=Centropages tenuiremis TaxID=544689 RepID=A0A0U2TIB2_9MAXI) HSP 1 Score: 235 bits (599), Expect = 1.110e-77 Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 1
Query: 1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
MSDVEGD AA +SGPMDINTAI EVLKQALIADGLARGLREAAKALDKRQALLC+LA+NCDEPMYKKLVTALCMEH IPLIKVDSNMKLGEWAGLCK+D E KARKVVKCS VV DWGKE+ AHD LQEYLK+ +
Sbjct: 1 MSDVEGDDVPAAATSSGPMDINTAIAEVLKQALIADGLARGLREAAKALDKRQALLCVLADNCDEPMYKKLVTALCMEHNIPLIKVDSNMKLGEWAGLCKLDNEDKARKVVKCSCAVVSDWGKETQAHDRLQEYLKSQR 139
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A1S6GLF5_9MAXI (40S ribosomal protein S12 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A1S6GLF5_9MAXI) HSP 1 Score: 229 bits (585), Expect = 1.510e-75 Identity = 111/137 (81.02%), Postives = 126/137 (91.97%), Query Frame = 1
Query: 1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKA 411
MSDVEGD + A GPMDINTAIQEVL+QALIADGL+RGLRE+AKALDKRQALLCIL+ENC++ YKKL++ALC+EH IPLIKVDSNMKLGEWAGL KIDQEGKARKVVKCSACV++DWGKESPAHD+L+EYLK+
Sbjct: 1 MSDVEGDDVPSGLSAGGPMDINTAIQEVLRQALIADGLSRGLRESAKALDKRQALLCILSENCEDATYKKLISALCIEHAIPLIKVDSNMKLGEWAGLYKIDQEGKARKVVKCSACVIKDWGKESPAHDILREYLKS 137
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A0U2T827_9MAXI (40S ribosomal protein S12 n=2 Tax=Calanoida TaxID=6833 RepID=A0A0U2T827_9MAXI) HSP 1 Score: 223 bits (568), Expect = 6.710e-73 Identity = 115/143 (80.42%), Postives = 124/143 (86.71%), Query Frame = 1
Query: 1 MSDVEGD-VPS--AAPV-ASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKANK 417
MSDVEGD VP+ AAP S PMDIN AI VLKQALIADGLARGLRE+AKALDKR+ALLC+LAENCDEPMYKKL+TALC EH IPLIKVDSNMKLGEWAGLCK+D EG ARKVVKCS VVRDWG E+PAHD LQEYLK+ +
Sbjct: 1 MSDVEGDAVPAVAAAPAPVSRPMDINEAIMTVLKQALIADGLARGLRESAKALDKRRALLCVLAENCDEPMYKKLITALCQEHSIPLIKVDSNMKLGEWAGLCKLDGEGNARKVVKCSCAVVRDWGTETPAHDFLQEYLKSQR 143
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A6M2DIB6_9NEOP (40S ribosomal protein S12 n=2 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DIB6_9NEOP) HSP 1 Score: 211 bits (537), Expect = 3.110e-68 Identity = 102/136 (75.00%), Postives = 118/136 (86.76%), Query Frame = 1
Query: 1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLK 408
MSDVE DVPSAAPV G MD+NTA+QEVLK ALI DGL GL EA K+LDKRQA+LC+LAE+CDEPMYKKLV ALC EH IPL+KVDSN KLGEWAGLCKID++GKARK+V CS V+RD+G+E+PA DVL++YLK
Sbjct: 1 MSDVEVDVPSAAPVVGGAMDVNTALQEVLKTALIHDGLVHGLHEATKSLDKRQAVLCVLAESCDEPMYKKLVQALCNEHQIPLVKVDSNKKLGEWAGLCKIDKDGKARKIVGCSCVVIRDFGEETPALDVLKDYLK 136
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: A0A7M5WSK6_9CNID (40S ribosomal protein S12 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WSK6_9CNID) HSP 1 Score: 207 bits (527), Expect = 1.110e-66 Identity = 102/137 (74.45%), Postives = 109/137 (79.56%), Query Frame = 1
Query: 1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKA 411
MSD EGD AP GPMDINTA+QE+LK A++ DGLARGLREA KALDKR ALLCILA NCDE MY KL+ ALC EH I LIKVD N KLGEWAGLCKID+EG ARKVV CS VV+DWGKES AHDVL EY KA
Sbjct: 1 MSDAEGDDVPTAPAPGGPMDINTALQEILKMAMVHDGLARGLREAVKALDKRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCKIDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKA 137
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: UPI0005AD037B (40S ribosomal protein S12 n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005AD037B) HSP 1 Score: 204 bits (518), Expect = 2.610e-65 Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 1
Query: 1 MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLKAN 414
MSD E D APV GPMD+N A+QEVLK ALI DG+ GL EAAKALDKRQA+LCILA+NCDEPMYKKLVTALC EH IP IKVD+N KLGEWAGLCKID GKARKVV CS V++D+G+E+PA DVL EY+K N
Sbjct: 1 MSDTEADDIPPAPVVGGPMDVNQALQEVLKNALIHDGVVHGLHEAAKALDKRQAMLCILADNCDEPMYKKLVTALCNEHQIPFIKVDNNKKLGEWAGLCKIDNAGKARKVVGCSCVVIKDFGEETPAKDVLIEYIKQN 138
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Match: UPI00083BFAD5 (40S ribosomal protein S12 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BFAD5) HSP 1 Score: 203 bits (517), Expect = 3.360e-65 Identity = 102/137 (74.45%), Postives = 113/137 (82.48%), Query Frame = 1
Query: 1 MSDVE-GDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDKRQALLCILAENCDEPMYKKLVTALCMEHGIPLIKVDSNMKLGEWAGLCKIDQEGKARKVVKCSACVVRDWGKESPAHDVLQEYLK 408
MSDVE D PSA P GPMD+N A+Q+VLK ALI DG+ GL EAAK LDKRQA+LCILAENCDEPMYKKLV+ALC EH IPLIKVD+N KLGEWAGLCKID GKARKVV CS V+ D+G+ESPA DVL+EYLK
Sbjct: 1 MSDVEVDDAPSAPPAVGGPMDVNQALQDVLKTALIHDGVIHGLHEAAKTLDKRQAVLCILAENCDEPMYKKLVSALCSEHQIPLIKVDNNKKLGEWAGLCKIDNTGKARKVVGCSCVVITDYGEESPALDVLKEYLK 137 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105121.806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig105121.806.1 >prot_Ecto-sp8_S_contig105121.806.1 ID=prot_Ecto-sp8_S_contig105121.806.1|Name=mRNA_Ecto-sp8_S_contig105121.806.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=139bp MSDVEGDVPSAAPVASGPMDINTAIQEVLKQALIADGLARGLREAAKALDback to top mRNA from alignment at Ecto-sp8_S_contig105121:54..470- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig105121.806.1 ID=mRNA_Ecto-sp8_S_contig105121.806.1|Name=mRNA_Ecto-sp8_S_contig105121.806.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105121:54..470- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105121:54..470- >mRNA_Ecto-sp8_S_contig105121.806.1 ID=mRNA_Ecto-sp8_S_contig105121.806.1|Name=mRNA_Ecto-sp8_S_contig105121.806.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105121:54..470- (Ectocarpus species8 EcLAC_412)back to top |