mRNA_Ecto-sp8_S_contig10510.802.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10510.802.1
Unique NamemRNA_Ecto-sp8_S_contig10510.802.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10510.802.1 vs. uniprot
Match: A0A6H5JD75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD75_9PHAE)

HSP 1 Score: 615 bits (1586), Expect = 9.770e-197
Identity = 382/426 (89.67%), Postives = 390/426 (91.55%), Query Frame = 1 
Query:    1 LARDEEAVSEATGFVEALELIASRGAMTSPSPAERAKSGSSGEAGNESMDALALALQWGDALRAQVAELQLGGDPAVAQALEETGKAAVAAERLWSPGERREGSGSEGRAAVEGLAAQLGELERFAEEAAEKRRAREAERGAAARRLDRLTATFNSLQETVKSAGEPLLASLTDAALSAAHDAITAVSATANAGVGLGDGKAVSSARESTLADAVQAXXXXXXXXXXXXXRARERAPQVSAERVRALQTLVGLAETLSEAGEQLASSSAERGLPSSREAAAAISQXXXXXXXXRAAAQADGGAWMSGAVVITDVVAEAGELVRRAQRAADGPAAAVPRAGRPAARGEDTVAAEAEAGAWLEEEPEGGAKTTDRPNRSDVGGVEDRSSSPGTTDARKARIGFSKKGEGAQTYLPLWMRLQKKLWDAG 1278
            LARDEEAVSEATGFVEALELIASR A TSPSPAERA SGSSGE GNESMDALALALQWGDALRAQVAELQLGGDPAVA ALEETGKAAVAAERLWSPGERREGSG+EGRAAVEGLAA+LGELERFAEEAAEKRRAREAERGAAARRLDRL+ATFNSLQETVKSAGEPLLASLTDAALS AHDAITA SAT        DGK VSSARESTLADAVQAXXXXXXXXXXXXXRARERAPQVSAERVRALQTLVGLAETLSEAGEQLASSSAERGLPSSREAAAAISQ        R AAQ+D GAWMS A  ITDVVAEAGELVRRA+RAADGPAAAVPRAGR AARGEDTV AEAEAGAWLEEE +GGAKTTDR NRSDVG VE +S+SP TTDARKARIGFSKKGEGAQTYLPLWMRLQKKLWDAG
Sbjct: 2771 LARDEEAVSEATGFVEALELIASREAKTSPSPAERAISGSSGEKGNESMDALALALQWGDALRAQVAELQLGGDPAVAHALEETGKAAVAAERLWSPGERREGSGAEGRAAVEGLAAKLGELERFAEEAAEKRRAREAERGAAARRLDRLSATFNSLQETVKSAGEPLLASLTDAALSVAHDAITAASATXXXXXXXXDGKTVSSARESTLADAVQAXXXXXXXXXXXXXRARERAPQVSAERVRALQTLVGLAETLSEAGEQLASSSAERGLPSSREAAAAISQAQAGLRRARDAAQSDWGAWMSEAAAITDVVAEAGELVRRAKRAADGPAAAVPRAGRSAARGEDTVVAEAEAGAWLEEEAKGGAKTTDRSNRSDVGSVEGQSTSPATTDARKARIGFSKKGEGAQTYLPLWMRLQKKLWDAG 3196
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BLAST of mRNA_Ecto-sp8_S_contig10510.802.1 vs. uniprot
Match: D7G576_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G576_ECTSI)

HSP 1 Score: 596 bits (1537), Expect = 3.710e-190
Identity = 383/429 (89.28%), Postives = 389/429 (90.68%), Query Frame = 1 
Query:    1 LARDEEAVSEATGFVEALELIASRGAMTSPSPAERAKSGSSGEAGNESMDALALALQWGDALRAQVAELQLGGDPAVAQALEETGKAAVAAERLWSPGERREGSGSEGRAAVEGLAAQLGELERFAEEAAEKRRAREAERGAAARRLDRLTATFNSLQETVKSAGEPLLASLTDAALSAAHDAITAVSATANAGVGLGDGKAVSSARESTLADAVQAXXXXXXXXXXXXXRARERAPQVSAERVRALQTLVGLAETLSEAGEQLASSSAERGLPSSREAAAAISQXXXXXXXXRAAAQADGGAWMSGAVVITDVVAEAGELVRRAQRAADGPAAA---VPRAGRPAARGEDTVAAEAEAGAWLEEEPEGGAKTTDRPNRSDVGGVEDRSSSPGTTDARKARIGFSKKGEGAQTYLPLWMRLQKKLWDAG 1278
            LARDEEAVSEATGFVEALELIASRGA TSPSPAERAKSGSSGE G+ESMDALALALQWGDALRAQVAELQLGGDPAVAQALEETGKAAVAAERLWSPGERREGSG+EGRAAVEGLAAQLGELERFAEEAAEKRR REAERGAAARRLDRLTATFNSLQETV SAGEPLLASLTDAALSAAHDAITA SAT           AVSSARESTLADAVQ XXXXXXXXXXXXXRARERAPQVSAERVRALQTLVGLAETLSEAGEQLASSSAERGLPSSREAAAAIS XXXXXXXX      DGGAWMSGA  ITDVVAEAGELVRRA+RA          VPRAGRPA+RGEDTVAAEAEA AW EEE +GGAKTTDRPNRSDVGGVED+SSSPGTTDARKARIGFSKKGEGAQTYLPLWMRLQKKLWD G
Sbjct: 2692 LARDEEAVSEATGFVEALELIASRGAKTSPSPAERAKSGSSGETGHESMDALALALQWGDALRAQVAELQLGGDPAVAQALEETGKAAVAAERLWSPGERREGSGAEGRAAVEGLAAQLGELERFAEEAAEKRRTREAERGAAARRLDRLTATFNSLQETVNSAGEPLLASLTDAALSAAHDAITAASATXXXXXXXXXXXAVSSARESTLADAVQXXXXXXXXXXXXXXRARERAPQVSAERVRALQTLVGLAETLSEAGEQLASSSAERGLPSSREAAAAISXXXXXXXXXXXXXXXDGGAWMSGAAAITDVVAEAGELVRRAKRAXXXXXXXXXXVPRAGRPASRGEDTVAAEAEARAWYEEEVKGGAKTTDRPNRSDVGGVEDQSSSPGTTDARKARIGFSKKGEGAQTYLPLWMRLQKKLWDTG 3120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10510.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JD75_9PHAE9.770e-19789.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G576_ECTSI3.710e-19089.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10510contigEcto-sp8_S_contig10510:2611..3889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1281
Hectar predicted targeting categoryother localisation
Exons1
Cds size1278
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143149.5738943-CDS-Ecto-sp8_S_contig10510:2610..38881681143149.5738943-CDS-Ecto-sp8_S_contig10510:2610..3888Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10510 2611..3888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10510.802.1prot_Ecto-sp8_S_contig10510.802.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10510 2611..3888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10510.802.1

>prot_Ecto-sp8_S_contig10510.802.1 ID=prot_Ecto-sp8_S_contig10510.802.1|Name=mRNA_Ecto-sp8_S_contig10510.802.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=426bp
LARDEEAVSEATGFVEALELIASRGAMTSPSPAERAKSGSSGEAGNESMD
ALALALQWGDALRAQVAELQLGGDPAVAQALEETGKAAVAAERLWSPGER
REGSGSEGRAAVEGLAAQLGELERFAEEAAEKRRAREAERGAAARRLDRL
TATFNSLQETVKSAGEPLLASLTDAALSAAHDAITAVSATANAGVGLGDG
KAVSSARESTLADAVQAAAVAVAQAEATVTRARERAPQVSAERVRALQTL
VGLAETLSEAGEQLASSSAERGLPSSREAAAAISQAQAGLSRARAAAQAD
GGAWMSGAVVITDVVAEAGELVRRAQRAADGPAAAVPRAGRPAARGEDTV
AAEAEAGAWLEEEPEGGAKTTDRPNRSDVGGVEDRSSSPGTTDARKARIG
FSKKGEGAQTYLPLWMRLQKKLWDAG
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mRNA from alignment at Ecto-sp8_S_contig10510:2611..3889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10510.802.1 ID=mRNA_Ecto-sp8_S_contig10510.802.1|Name=mRNA_Ecto-sp8_S_contig10510.802.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10510:2611..3889+ (Ectocarpus species8 EcLAC_412)
CTCGCGCGCGACGAAGAGGCCGTATCGGAGGCTACCGGATTCGTCGAGGC
CCTCGAGCTAATCGCGTCTCGGGGGGCGATGACCTCTCCTTCCCCGGCGG
AGCGAGCCAAATCGGGCTCCTCGGGTGAGGCGGGGAACGAATCCATGGAC
GCGTTGGCTTTAGCCTTGCAGTGGGGCGATGCGCTGCGCGCACAGGTGGC
TGAGCTCCAGCTCGGCGGCGACCCTGCCGTAGCGCAGGCGCTCGAGGAGA
CTGGGAAGGCTGCGGTCGCCGCCGAAAGGCTGTGGTCCCCCGGCGAACGA
CGAGAAGGGTCGGGGTCGGAAGGACGGGCTGCCGTCGAGGGTCTGGCCGC
ACAGCTGGGAGAGCTCGAAAGGTTTGCCGAGGAAGCCGCTGAGAAGCGAC
GTGCGCGCGAGGCCGAGCGCGGGGCGGCGGCCAGACGGTTGGATCGCCTT
ACGGCCACCTTCAACTCTCTACAGGAGACGGTGAAGTCGGCCGGCGAGCC
CCTCCTTGCCTCCCTCACCGATGCTGCGCTGAGCGCTGCGCACGACGCCA
TCACCGCTGTATCAGCAACTGCCAACGCCGGAGTAGGGTTGGGCGATGGC
AAGGCTGTGAGTAGCGCCCGGGAATCGACGCTGGCCGACGCTGTTCAGGC
CGCGGCGGTCGCGGTCGCTCAGGCGGAGGCGACGGTGACGCGCGCGCGGG
AGCGGGCGCCCCAGGTGTCCGCGGAGAGGGTCCGTGCTCTGCAGACCCTG
GTGGGCCTGGCCGAGACCCTGAGCGAGGCCGGGGAGCAGCTCGCCTCCTC
CTCGGCGGAACGCGGCCTGCCCTCGTCTCGAGAGGCGGCGGCCGCCATCT
CGCAGGCGCAGGCGGGGCTGAGCAGGGCCCGCGCCGCGGCACAGGCCGAC
GGGGGGGCTTGGATGTCGGGAGCGGTGGTGATCACGGACGTTGTCGCGGA
AGCGGGGGAGCTCGTGAGGCGGGCACAGCGCGCCGCCGATGGCCCCGCCG
CCGCTGTGCCCCGCGCCGGGCGGCCGGCGGCAAGGGGCGAGGACACCGTG
GCGGCAGAAGCCGAAGCCGGAGCGTGGCTGGAGGAAGAGCCGGAGGGTGG
GGCGAAGACCACCGATAGGCCTAACAGGTCGGATGTCGGGGGCGTGGAGG
ACCGATCGTCGTCCCCGGGGACGACTGACGCGCGCAAGGCGAGAATCGGA
TTCAGCAAAAAGGGGGAGGGTGCTCAGACGTACCTGCCTCTGTGGATGCG
CTTGCAGAAGAAGCTGTGGGACGCGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10510:2611..3889+

>mRNA_Ecto-sp8_S_contig10510.802.1 ID=mRNA_Ecto-sp8_S_contig10510.802.1|Name=mRNA_Ecto-sp8_S_contig10510.802.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10510:2611..3889+ (Ectocarpus species8 EcLAC_412)
CTCGCGCGCGACGAAGAGGCCGTATCGGAGGCTACCGGATTCGTCGAGGC
CCTCGAGCTAATCGCGTCTCGGGGGGCGATGACCTCTCCTTCCCCGGCGG
AGCGAGCCAAATCGGGCTCCTCGGGTGAGGCGGGGAACGAATCCATGGAC
GCGTTGGCTTTAGCCTTGCAGTGGGGCGATGCGCTGCGCGCACAGGTGGC
TGAGCTCCAGCTCGGCGGCGACCCTGCCGTAGCGCAGGCGCTCGAGGAGA
CTGGGAAGGCTGCGGTCGCCGCCGAAAGGCTGTGGTCCCCCGGCGAACGA
CGAGAAGGGTCGGGGTCGGAAGGACGGGCTGCCGTCGAGGGTCTGGCCGC
ACAGCTGGGAGAGCTCGAAAGGTTTGCCGAGGAAGCCGCTGAGAAGCGAC
GTGCGCGCGAGGCCGAGCGCGGGGCGGCGGCCAGACGGTTGGATCGCCTT
ACGGCCACCTTCAACTCTCTACAGGAGACGGTGAAGTCGGCCGGCGAGCC
CCTCCTTGCCTCCCTCACCGATGCTGCGCTGAGCGCTGCGCACGACGCCA
TCACCGCTGTATCAGCAACTGCCAACGCCGGAGTAGGGTTGGGCGATGGC
AAGGCTGTGAGTAGCGCCCGGGAATCGACGCTGGCCGACGCTGTTCAGGC
CGCGGCGGTCGCGGTCGCTCAGGCGGAGGCGACGGTGACGCGCGCGCGGG
AGCGGGCGCCCCAGGTGTCCGCGGAGAGGGTCCGTGCTCTGCAGACCCTG
GTGGGCCTGGCCGAGACCCTGAGCGAGGCCGGGGAGCAGCTCGCCTCCTC
CTCGGCGGAACGCGGCCTGCCCTCGTCTCGAGAGGCGGCGGCCGCCATCT
CGCAGGCGCAGGCGGGGCTGAGCAGGGCCCGCGCCGCGGCACAGGCCGAC
GGGGGGGCTTGGATGTCGGGAGCGGTGGTGATCACGGACGTTGTCGCGGA
AGCGGGGGAGCTCGTGAGGCGGGCACAGCGCGCCGCCGATGGCCCCGCCG
CCGCTGTGCCCCGCGCCGGGCGGCCGGCGGCAAGGGGCGAGGACACCGTG
GCGGCAGAAGCCGAAGCCGGAGCGTGGCTGGAGGAAGAGCCGGAGGGTGG
GGCGAAGACCACCGATAGGCCTAACAGGTCGGATGTCGGGGGCGTGGAGG
ACCGATCGTCGTCCCCGGGGACGACTGACGCGCGCAAGGCGAGAATCGGA
TTCAGCAAAAAGGGGGAGGGTGCTCAGACGTACCTGCCTCTGTGGATGCG
CTTGCAGAAGAAGCTGTGGGACGCGGGG
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