mRNA_Ecto-sp8_S_contig105015.790.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105015.790.1
Unique NamemRNA_Ecto-sp8_S_contig105015.790.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: D7G7I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I2_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 2.530e-60
Identity = 104/133 (78.20%), Postives = 105/133 (78.95%), Query Frame = 1
Query:    1 SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISR--------------------------EFSADTGSEPSPSYRLKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
            SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRG SR                          EFSADTGSEPSPSYR K+GRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI
Sbjct: 1385 SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGTSRGISLGRGVEQPPGVPAGMGMRDPAYEEFSADTGSEPSPSYRPKRGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 1517          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A6H5JER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER7_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.230e-56
Identity = 100/133 (75.19%), Postives = 101/133 (75.94%), Query Frame = 1
Query:    1 SCMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISR--------------------------EFSADTGSEPSPSYRLKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
            SCMRYSPSGSHLAIGCKNGSLVIMAVE DDGRYDDAGEQRG SR                          EFSADTGSE SPSYR K+ RR VYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI
Sbjct:  521 SCMRYSPSGSHLAIGCKNGSLVIMAVERDDGRYDDAGEQRGRSRGISLGRGVEQPPGVPEGMGMRDPAYEEFSADTGSESSPSYRPKRERRKVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 653          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A183A573_9TREM (HELP domain-containing protein n=2 Tax=Echinostomatoidea TaxID=404429 RepID=A0A183A573_9TREM)

HSP 1 Score: 53.5 bits (127), Expect = 5.640e-6
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   16 SPSGSH-----LAIGCKNGS-LVIMAVEHD--DGRYDDAGEQRGISREFSAD-----TGSEPSPSYR---LKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHW 315
            SPSG       +A+G  +G  LVI A+ H+      D  GEQ      +S D      GS  +  Y    L+QGR+  Y R+    GHSS VLH+DW+ DGR++ +   DY LL W
Sbjct:  469 SPSGLGSGEPVIALGTTSGRWLVIDALRHEIIAAHSDGIGEQIECIA-YSPDGYYLALGSRDNGIYVYHVLEQGRK--YNRVGRCSGHSSFVLHIDWSTDGRYLRSVSGDYELLFW 581          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A0R3X3E0_HYDTA (Uncharacterized protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3X3E0_HYDTA)

HSP 1 Score: 52.4 bits (124), Expect = 1.380e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1
Query:  190 RRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
            R T Y R+    GHSS VLHLDW+ED +++ +   DY LL+W +
Sbjct:  327 RGTKYSRLGKCSGHSSFVLHLDWSEDSQYIRSVSGDYELLYWSV 370          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A0X3NU21_SCHSO (Uncharacterized protein n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3NU21_SCHSO)

HSP 1 Score: 50.8 bits (120), Expect = 4.830e-5
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query:  202 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
            Y R+    GHSS VLHLDW+ED +++ T   DY LL+W +
Sbjct:  352 YTRLGKCSGHSSFVLHLDWSEDSQYLRTTSGDYELLYWTV 391          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A0R3W9K2_TAEAS (HELP domain-containing protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3W9K2_TAEAS)

HSP 1 Score: 50.8 bits (120), Expect = 4.960e-5
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1
Query:  190 RRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHW 315
            R T Y R+    GHSS VLHLDW+ED +++ +   DY LL+W
Sbjct:  497 RGTKYSRLGKCSGHSSFVLHLDWSEDNQYIRSVSGDYELLYW 538          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A183SD58_SCHSO (HELP domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SD58_SCHSO)

HSP 1 Score: 50.8 bits (120), Expect = 5.090e-5
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query:  202 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
            Y R+    GHSS VLHLDW+ED +++ T   DY LL+W +
Sbjct:  790 YTRLGKCSGHSSFVLHLDWSEDSQYLRTTSGDYELLYWTV 829          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A654H070_9CEST (HELP domain-containing protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654H070_9CEST)

HSP 1 Score: 50.8 bits (120), Expect = 5.100e-5
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query:  202 YRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
            Y R+    GHSS VLHLDW+ED +++ T   DY LL+W +
Sbjct:  819 YTRLGKCSGHSSFVLHLDWSEDSQYLRTTSGDYELLYWTV 858          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A1R2BP96_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BP96_9CILI)

HSP 1 Score: 50.4 bits (119), Expect = 7.180e-5
Identity = 33/111 (29.73%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   13 YSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISR-EFSAD-----TGSEPSP--SYRLKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWDI 321
            YSPSG  +A+G +NG ++I+  E  + +       +GIS+ ++S D      G   S   +Y + +  +  Y+    +KGHSS + HLD++E G  + +    Y LL+ ++
Sbjct:  640 YSPSGDSIAVGLQNGKILILNAETLEVKAGKHDRIKGISQIKYSPDGSILAAGGHDSIIITYLVNENYKLQYK----MKGHSSAITHLDFSESGGTIQSTSLSYELLYHNL 746          
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Match: A0A1X2IMR4_9FUNG (Protein HIR n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IMR4_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 9.500e-5
Identity = 30/107 (28.04%), Postives = 50/107 (46.73%), Query Frame = 1
Query:    4 CMRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISREFSADTGSEPSPSYRLKQG--RRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHLLHWD 318
            C+R+S +G +LA    N ++VI+                        +  SEPS +     G  ++  +R + HL+GH S V  L W+ D R++ +CG D + + WD
Sbjct:   88 CVRWSKNGRYLASSSDNDNVVIIW-----------------------ELDSEPSSASDFGDGEAKQETWRPVKHLRGHDSDVQDLAWSNDNRYLASCGIDGYAIIWD 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105015.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G7I2_ECTSI2.530e-6078.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JER7_9PHAE1.230e-5675.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A183A573_9TREM5.640e-637.93HELP domain-containing protein n=2 Tax=Echinostoma... [more]
A0A0R3X3E0_HYDTA1.380e-547.73Uncharacterized protein n=1 Tax=Hydatigena taeniae... [more]
A0A0X3NU21_SCHSO4.830e-550.00Uncharacterized protein n=2 Tax=Schistocephalus so... [more]
A0A0R3W9K2_TAEAS4.960e-550.00HELP domain-containing protein n=1 Tax=Taenia asia... [more]
A0A183SD58_SCHSO5.090e-550.00HELP domain-containing protein n=1 Tax=Schistoceph... [more]
A0A654H070_9CEST5.100e-550.00HELP domain-containing protein n=2 Tax=Diphyllobot... [more]
A0A1R2BP96_9CILI7.180e-529.73Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1X2IMR4_9FUNG9.500e-528.04Protein HIR n=1 Tax=Absidia repens TaxID=90262 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105015contigEcto-sp8_S_contig105015:38..436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score206.1
Seed ortholog evalue8.2e-51
Seed eggNOG ortholog2880.D7G7I2
Model size321
KEGG koko:K18598
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size315
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.663738-CDS-Ecto-sp8_S_contig105015:37..2251681143148.663738-CDS-Ecto-sp8_S_contig105015:37..225Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105015 38..225 -
1681143148.6752717-CDS-Ecto-sp8_S_contig105015:303..4301681143148.6752717-CDS-Ecto-sp8_S_contig105015:303..430Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105015 304..430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.692062-UTR-Ecto-sp8_S_contig105015:430..4361681143148.692062-UTR-Ecto-sp8_S_contig105015:430..436Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig105015 431..436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105015.790.1prot_Ecto-sp8_S_contig105015.790.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105015 38..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105015.790.1

>prot_Ecto-sp8_S_contig105015.790.1 ID=prot_Ecto-sp8_S_contig105015.790.1|Name=mRNA_Ecto-sp8_S_contig105015.790.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
MRYSPSGSHLAIGCKNGSLVIMAVEHDDGRYDDAGEQRGISREFSADTGS
EPSPSYRLKQGRRTVYRRIAHLKGHSSRVLHLDWTEDGRFVHTCGQDYHL
LHWDI
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mRNA from alignment at Ecto-sp8_S_contig105015:38..436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105015.790.1 ID=mRNA_Ecto-sp8_S_contig105015.790.1|Name=mRNA_Ecto-sp8_S_contig105015.790.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=399bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105015:38..436- (Ectocarpus species8 EcLAC_412)
TCGTGCATGCGTTATTCGCCGTCGGGATCTCACCTGGCGATTGGCTGCAA GAACGGAAGTCTCGTGATCATGGCCGTTGAGCACGACGACGGAAGGTACG ACGACGCGGGGGAGCAACGAGGAATATCAAGAGGTATCAGCCTAGGCCGG GGTGTTGAGCAGCCGCCAGGGGTGCCGGAGGGGATGGAGATGAGAGACCC CGCATACGAAGAGTTTTCGGCCGACACCGGCAGCGAGCCGTCGCCTTCAT ACCGACTAAAACAAGGGCGAAGAACGGTCTACCGGCGAATAGCCCACCTC AAGGGCCACAGCTCTAGAGTGCTCCACTTAGATTGGACCGAGGATGGGCG CTTCGTGCACACCTGCGGACAGGACTACCATCTCTTGCACTGGGACATT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105015:38..436-

>mRNA_Ecto-sp8_S_contig105015.790.1 ID=mRNA_Ecto-sp8_S_contig105015.790.1|Name=mRNA_Ecto-sp8_S_contig105015.790.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105015:38..436- (Ectocarpus species8 EcLAC_412)
ATGCGTTATTCGCCGTCGGGATCTCACCTGGCGATTGGCTGCAAGAACGG
AAGTCTCGTGATCATGGCCGTTGAGCACGACGACGGAAGGTACGACGACG
CGGGGGAGCAACGAGGAATATCAAGAGAGTTTTCGGCCGACACCGGCAGC
GAGCCGTCGCCTTCATACCGACTAAAACAAGGGCGAAGAACGGTCTACCG
GCGAATAGCCCACCTCAAGGGCCACAGCTCTAGAGTGCTCCACTTAGATT
GGACCGAGGATGGGCGCTTCGTGCACACCTGCGGACAGGACTACCATCTC
TTGCACTGGGACATT
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