mRNA_Ecto-sp8_S_contig10462.738.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10462.738.1
Unique NamemRNA_Ecto-sp8_S_contig10462.738.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: D7G426_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G426_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 8.340e-59
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            RY NLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQ+
Sbjct:    3 RYANLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQI 106
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A835Z979_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z979_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.830e-41
Identity = 81/109 (74.31%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGV-----LGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            R+ NLLKPLDLGHTQLKNR+LMGSMHTGLEE G      LG GLSK+AAFFAERARGG GLMVTGGIAPNRAGTV P+AAKLT+    + HAEVT AVH+   KICMQ+
Sbjct:    6 RFPNLLKPLDLGHTQLKNRILMGSMHTGLEETGPGALIGLGSGLSKMAAFFAERARGGVGLMVTGGIAPNRAGTVAPLAAKLTSRGEAKGHAEVTAAVHEAGSKICMQI 114
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A3R7W5M1_9STRA (Oxidored_FMN domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W5M1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 9.090e-39
Identity = 75/104 (72.12%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            +Y +LL+PLDLG TQLKNRVLMGSMHTGLEE    G  L++LAAFFAERA+G  GL+VTGGIAPNRAG V P+AAKLT  R V AH EVT+AVH NDGKI MQ+
Sbjct:    3 KYSHLLQPLDLGFTQLKNRVLMGSMHTGLEE----GKSLTRLAAFFAERAKGNVGLIVTGGIAPNRAGRVSPLAAKLTTYREVNAHKEVTQAVHDNDGKIAMQI 102
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A7S4DKU1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKU1_HETAK)

HSP 1 Score: 132 bits (332), Expect = 7.240e-38
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:   10 NLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQN--DGKICMQV 312
            NL  PL L HT LKNR++MGSMHTGLE+  +  GGL KL A+FAERA+GG GLMVTGGIAPNRAG  YP AAKLTN+  VRAH +VT AVH    D KIC+Q+
Sbjct:    2 NLFSPLKLPHTTLKNRIVMGSMHTGLEDGSIFQGGLQKLGAYFAERAKGGVGLMVTGGIAPNRAGQAYPGAAKLTNAWEVRAHRDVTSAVHSAAPDAKICLQI 104
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A3M6VJG7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJG7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 8.870e-37
Identity = 75/104 (72.12%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            +Y +LL+PLDLG TQLKNRVLMGSMHTGLEE    G  L++LAAFFAERA+G  GL+VTGGIAPNRAG V P+AAKLT  R V AH EVT+AVH NDGKI MQ+
Sbjct:    3 KYSHLLQPLDLGFTQLKNRVLMGSMHTGLEE----GKSLTRLAAFFAERAKGNVGLIVTGGIAPNRAGRVSPLAAKLTTYREVNAHKEVTQAVHDNDGKIAMQI 102
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A6N6KL37_9BACT (NADPH-dependent 2,4-dienoyl-CoA reductase (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6N6KL37_9BACT)

HSP 1 Score: 131 bits (330), Expect = 1.310e-36
Identity = 71/103 (68.93%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    4 YGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            Y  LL PLDLG TQLKNRVLMGSMHTGLEE     GG  K+AA+FAERA+GG GLMVTGGIAPNRAG V P A +LT SR  + H  VT+AVH   GKICMQ+
Sbjct:    5 YPYLLAPLDLGFTQLKNRVLMGSMHTGLEEAR---GGFEKMAAYFAERAKGGVGLMVTGGIAPNRAGWVSPFAGQLTTSRQAKKHKVVTDAVHAEGGKICMQI 104
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A0P1AI02_PLAHL (-dienoyl-reductase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AI02_PLAHL)

HSP 1 Score: 138 bits (347), Expect = 7.770e-36
Identity = 74/104 (71.15%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            +Y +LL+PLDLG T+LKNRVLMGSMHTGLEE    G  L++LAAFFAERA+G  GL+VTGGIAPNRAG V P+AAKLT  R V AH EVT+AVH NDGKI MQ+
Sbjct:    3 KYPHLLQPLDLGFTKLKNRVLMGSMHTGLEE----GKSLTRLAAFFAERAKGNVGLIVTGGIAPNRAGRVSPLAAKLTTQREVIAHKEVTQAVHDNDGKIAMQI 102
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A6A5AM93_9STRA (Oxidored_FMN domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AM93_9STRA)

HSP 1 Score: 129 bits (324), Expect = 9.480e-36
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    1 RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            +Y +LL PLDLG T LKNRVLMGSMHTGLEE    G  L+KLAAFF+ERARG  GL+VTGG+APNRAG V P+A K+T S  +  H EVT+AVH N GKI MQ+
Sbjct:   11 KYPHLLTPLDLGFTTLKNRVLMGSMHTGLEE----GRSLTKLAAFFSERARGDVGLIVTGGVAPNRAGRVSPLAGKMTTSSEINRHKEVTQAVHGNGGKIAMQI 110
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: M4B9V5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9V5_HYAAE)

HSP 1 Score: 136 bits (342), Expect = 3.770e-35
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            +Y +LL+PLDLG TQLKNR+LMGSMHTGLEE    G  L++LAAFFAERARG  GL+VTGGIAPNRAG V P+AAKLT    V AH EVT+AVH +DGKI MQ+
Sbjct:    3 KYPHLLQPLDLGFTQLKNRILMGSMHTGLEE----GKSLTRLAAFFAERARGNVGLIVTGGIAPNRAGRVSPLAAKLTTQGEVTAHREVTKAVHDHDGKIAMQI 102
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Match: A0A3M1L3M7_9BACT (NADPH-dependent 2,4-dienoyl-CoA reductase (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1L3M7_9BACT)

HSP 1 Score: 126 bits (317), Expect = 8.940e-35
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    4 YGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERARGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKICMQV 312
            Y +L +PLDLG T LKNR+LMGSMHTGLEE     GG  +LAA+FAERARG  GL+VTGGIAPNR G V P AAKL+  R +R H  +TEAVH+  GKICMQ+
Sbjct:    6 YPHLFRPLDLGFTTLKNRILMGSMHTGLEEER---GGFERLAAYFAERARGEVGLIVTGGIAPNREGWVSPFAAKLSTRREMRKHRLITEAVHREGGKICMQI 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10462.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G426_ECTSI8.340e-5998.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z979_9STRA4.830e-4174.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3R7W5M1_9STRA9.090e-3972.12Oxidored_FMN domain-containing protein n=1 Tax=Per... [more]
A0A7S4DKU1_HETAK7.240e-3866.99Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3M6VJG7_9STRA8.870e-3772.12Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6N6KL37_9BACT1.310e-3668.93NADPH-dependent 2,4-dienoyl-CoA reductase (Fragmen... [more]
A0A0P1AI02_PLAHL7.770e-3671.15-dienoyl-reductase n=1 Tax=Plasmopara halstedii Ta... [more]
A0A6A5AM93_9STRA9.480e-3666.35Oxidored_FMN domain-containing protein n=1 Tax=Aph... [more]
M4B9V5_HYAAE3.770e-3570.19Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3M1L3M7_9BACT8.940e-3565.05NADPH-dependent 2,4-dienoyl-CoA reductase (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10462contigEcto-sp8_S_contig10462:4879..6460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score202.6
Seed ortholog evalue9e-50
Seed eggNOG ortholog2880.D7G426
Model size312
KEGG koko:K00219
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.NADPH-adrenodoxin reductase activity
EggNOG OGsCOG0493@1,COG1902@1,KOG0134@2759,KOG1800@2759
EC1.3.1.34
Cds size312
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143145.158529-CDS-Ecto-sp8_S_contig10462:4878..49841681143145.158529-CDS-Ecto-sp8_S_contig10462:4878..4984Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10462 4879..4984 +
1681143145.1768615-CDS-Ecto-sp8_S_contig10462:5735..58801681143145.1768615-CDS-Ecto-sp8_S_contig10462:5735..5880Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10462 5736..5880 +
1681143145.1881104-CDS-Ecto-sp8_S_contig10462:6399..64601681143145.1881104-CDS-Ecto-sp8_S_contig10462:6399..6460Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10462 6400..6460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10462.738.1prot_Ecto-sp8_S_contig10462.738.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10462 4879..6460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10462.738.1

>prot_Ecto-sp8_S_contig10462.738.1 ID=prot_Ecto-sp8_S_contig10462.738.1|Name=mRNA_Ecto-sp8_S_contig10462.738.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=104bp
RYGNLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLGGGLSKLAAFFAERA
RGGAGLMVTGGIAPNRAGTVYPMAAKLTNSRGVRAHAEVTEAVHQNDGKI
CMQV
back to top

mRNA from alignment at Ecto-sp8_S_contig10462:4879..6460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10462.738.1 ID=mRNA_Ecto-sp8_S_contig10462.738.1|Name=mRNA_Ecto-sp8_S_contig10462.738.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1582bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10462:4879..6460+ (Ectocarpus species8 EcLAC_412)
AGATATGGCAACCTTCTCAAGCCCTTGGACCTAGGGCACACGCAGCTCAA
GAACCGTGTGCTCATGGGATCCATGCACACTGGCTTAGAGGAGCGGGGAG
TCTTGGGTGAGAAAAAAAGCATTCGTGCCCCTGACAACAGCAGAAACTGG
GCACATTAAAATGTTCCTCTCAGCTGCAGGTTCGATGGTTTGAATCAAGA
AATAGGAAGTGGAAGGTTCCGCGGGCTATGTATAGGTACAAGGAGCTCGG
AAAGTAGTGCCAGCAAGTATGGGCATTGCTAGCCTTGCCCGCAAAACGAC
GTCTGGACTTGTAGTATCAGCTTTGTGCTGTATGACGAGTGCGACCGTCG
ACCGAATTCCATACTTCCAAATCGCGTGTGTTTTCTGCTGTGTCTGGCGC
AACCTGATCTCGGGTTCCACCCTAGCTCGACAACTGGTATGATATTCACA
CGGGAAAAACAAGGTTCGCACGGGCCTCATGGACGACTGACTCACTCCAT
CAGGCGGTGTTCTGTTCGTTGTGCCGAAAATCCACCCGACTCTCTTGTGC
TACAACATGTTTCCCTCAACCGCTGTGTGGTACCTTCCCTGCGGTGGAGG
AAGCTCCTATTTAGAAATATGACGCGAACATTTTCGGAGATGCTTCTTTC
GCAGTGAAAGCACGGATGCCAGGGGGCGACACCCAAAATCCCACATACCG
GCGGTCGGCGACACAGGTCTTCAACTTTGAACATGATTGAACATGTGAAG
TTTACCCGTGGTGCATGTCCACACTAGAATACCTCACCCCGCCTGCCGCG
CTCGACACTTCCTGATGACAATTGGCACGGCTGACATACCTTGGCACGCT
CCAACAGGCGGTGGGCTTTCCAAGCTGGCGGCGTTTTTCGCCGAGCGAGC
CAGGGGCGGAGCTGGCTTGATGGTCACCGGAGGCATCGCTCCTAACCGGG
CGGGGACAGTCTACCCCATGGCCGCCAAGCTGACCAACAGTCGTGGAGTC
AGGTTAGCTAAATATTACGCGCGGGATAACTCTTGTTCAACACACCCTGG
TTTCGTCGCATTCGTACACGCGGTGTGCTCCGTGACCCTTACGGTCGTTC
CCAGTAAAGGTCGTCGGGGTCCTGCCGCGAAACGAGCCGCGGTACGAAAT
TGGAACGGGGCGTTTGCAGTTGTCCTAGAATATTACCCGCCGGTACACCA
GACGTGACACGAAGCATTGGTACACCTTGCGGCCAGCATTCTGTCCGAAT
GATCCTGTCTTACGCCTTGCATCGCTATCGCCTGCATCGCCGCGTACTGC
GTGGCGACACTCACGCATCTCTGCGCATTTGACATGGTTGCCCTACCTTG
AACCCGACTTCCTCTTTCATTTCTCCCTTAACGCCTTGCACCGCCGTGTG
CAGCGTGGAGACACCCGCGTATCGCTGGGCATGTGACATCGTTGCCCTAC
CTAGAACCCACCCTTCCTTCCGTCTTCATTTCTCCCTTGGGGGCGATTTG
CACTGGCTTTTCTTTTGTCAGGGCGCACGCGGAGGTGACGGAGGCCGTGC
ACCAGAATGACGGCAAGATCTGCATGCAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10462:4879..6460+

>mRNA_Ecto-sp8_S_contig10462.738.1 ID=mRNA_Ecto-sp8_S_contig10462.738.1|Name=mRNA_Ecto-sp8_S_contig10462.738.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10462:4879..6460+ (Ectocarpus species8 EcLAC_412)
AGATATGGCAACCTTCTCAAGCCCTTGGACCTAGGGCACACGCAGCTCAA
GAACCGTGTGCTCATGGGATCCATGCACACTGGCTTAGAGGAGCGGGGAG
TCTTGGGCGGTGGGCTTTCCAAGCTGGCGGCGTTTTTCGCCGAGCGAGCC
AGGGGCGGAGCTGGCTTGATGGTCACCGGAGGCATCGCTCCTAACCGGGC
GGGGACAGTCTACCCCATGGCCGCCAAGCTGACCAACAGTCGTGGAGTCA
GGGCGCACGCGGAGGTGACGGAGGCCGTGCACCAGAATGACGGCAAGATC
TGCATGCAGGTG
back to top