mRNA_Ecto-sp8_S_contig104547.723.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104547.723.1
Unique NamemRNA_Ecto-sp8_S_contig104547.723.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A6H5L6B2_9PHAE (DHQ_synthase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6B2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.520e-34
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            +TGLGYGKLLHGEAVAIGMHMAADMSCRMGWVD ELVDRSVALM+KAGLPVELPKGGGMDMDKF
Sbjct:  332 ETGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDQELVDRSVALMEKAGLPVELPKGGGMDMDKF 395
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: W7TCV4_9STRA (3-dehydroquinate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCV4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.710e-21
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            +TGLGYGK LHGEAV++GM MA DMS R+GWVD E+  R+V L+Q+AGLPV LP+  GMD++KF
Sbjct:  314 ETGLGYGKWLHGEAVSLGMVMAVDMSVRLGWVDREVYSRTVGLLQRAGLPVALPEESGMDLEKF 377
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A4D9CYT3_9STRA (DHQ_synthase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYT3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.210e-20
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            +TGLGYGK LHGEAV++GM MA DMS R+GWVD E+  R+V L+Q+AGLPV LP+  GMD++KF
Sbjct:  636 ETGLGYGKWLHGEAVSLGMVMAVDMSVRLGWVDREVYSRTVGLLQRAGLPVALPEESGMDLEKF 699
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A835Z318_9STRA (3-Dehydroquinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z318_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.380e-20
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            +TGLGYG LLHGEAVAIG HMAA MS ++GW+D  L  R+VAL++ A LPVELP+GGGM   KF
Sbjct:  264 ETGLGYGALLHGEAVAIGTHMAAVMSAKLGWIDAALAARAVALLRAAALPVELPRGGGMTPAKF 327
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A7S3VKI3_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKI3_DUNTE)

HSP 1 Score: 79.0 bits (193), Expect = 1.170e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDK 189
            +TG GYG LLHGEAV+IGM MAADMS R+GW+D  ++DR+ AL+Q+A LPV +P    +DM K
Sbjct:  354 ETGTGYGTLLHGEAVSIGMVMAADMSYRLGWIDRSILDRTRALLQRARLPVTVPPEMTVDMFK 416
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A7S2SSH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSH1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.810e-15
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            +TGLGYGK LHGEAVA+G  MAAD+S ++GW+  +L +R++ L+++A LP++LP   G+ +D F
Sbjct:  313 ETGLGYGKWLHGEAVAVGTVMAADLSLKLGWITPDLQERAIRLLERAQLPIDLPDDHGLTVDDF 376
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A7S2V3U2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3U2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.830e-15
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            + GLGYG+ LHGEAVA G  MAADMS  MGW++  + DR++AL ++A LP +LP+G GM  +KF
Sbjct:  310 ELGLGYGEWLHGEAVAAGTMMAADMSAAMGWIEPSVGDRTLALFKQANLPTKLPQGCGMTPEKF 373
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A5J4XWX6_9CHLO (3-dehydroquinate synthase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XWX6_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 3.910e-15
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            +TGLGYG  LHGEAVA GM MAADMS R+GW+D  ++DR+  L+Q+A LPVE P+G  M   KF
Sbjct:  323 ETGLGYGVWLHGEAVAAGMVMAADMSHRLGWIDQSILDRTRHLLQRAKLPVEAPQG--MTQHKF 384
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: UPI0003B7915E (3-dehydroquinate synthase n=1 Tax=Methylohalobius crimeensis TaxID=244365 RepID=UPI0003B7915E)

HSP 1 Score: 76.3 bits (186), Expect = 8.490e-15
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPKGGGMDMDKF 192
            +TG+GYG+ LHGEAVAIGM  AAD+SCRMGW+      R++AL+++AGLPV  PK   +D D+F
Sbjct:  264 ETGIGYGRYLHGEAVAIGMCQAADLSCRMGWLAPADGKRAIALLERAGLPVTPPKT--LDSDRF 325
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BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Match: A0A388KPP9_CHABU (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KPP9_CHABU)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLPVELPK 165
            + GLGYG  LHGEAVA GM MAADMS R+GW+D ELV+R+VAL+ +A LP   PK
Sbjct: 1062 EAGLGYGAWLHGEAVAAGMTMAADMSYRLGWIDKELVERAVALLDQANLPTRPPK 1116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104547.723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B2_9PHAE3.520e-3495.31DHQ_synthase domain-containing protein n=2 Tax=Ect... [more]
W7TCV4_9STRA7.710e-2165.633-dehydroquinate synthase n=1 Tax=Nannochloropsis ... [more]
A0A4D9CYT3_9STRA1.210e-2065.63DHQ_synthase domain-containing protein n=1 Tax=Nan... [more]
A0A835Z318_9STRA5.380e-2067.193-Dehydroquinate synthase n=1 Tax=Tribonema minus ... [more]
A0A7S3VKI3_DUNTE1.170e-1560.32Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S2SSH1_9STRA2.810e-1551.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V3U2_9STRA3.830e-1556.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5J4XWX6_9CHLO3.910e-1560.943-dehydroquinate synthase n=1 Tax=Trebouxia sp. A1... [more]
UPI0003B7915E8.490e-1557.813-dehydroquinate synthase n=1 Tax=Methylohalobius ... [more]
A0A388KPP9_CHABU1.100e-1465.45Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104547contigEcto-sp8_S_contig104547:168..359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score132.1
Seed ortholog evalue9.2e-29
Seed eggNOG ortholog2880.D8LEE6
Model size192
KEGG rclassRC00847
KEGG koko:K01735
KEGG ReactionR03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019632,GO:0019752,GO:0031410,GO:0031982,GO:0031984,GO:0032787,GO:0033587,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:0097708,GO:0098791,GO:1901576,GO:1901615,GO:1901617
Exons1
EggNOG free text desc.shikimate 3-dehydrogenase (NADP ) activity
EggNOG OGsCOG0169@1,KOG0692@2759
EC4.2.3.4
Cds size192
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143144.2149534-CDS-Ecto-sp8_S_contig104547:167..3591681143144.2149534-CDS-Ecto-sp8_S_contig104547:167..359Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104547 168..359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104547.723.1prot_Ecto-sp8_S_contig104547.723.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104547 168..359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104547.723.1

>prot_Ecto-sp8_S_contig104547.723.1 ID=prot_Ecto-sp8_S_contig104547.723.1|Name=mRNA_Ecto-sp8_S_contig104547.723.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=64bp
QTGLGYGKLLHGEAVAIGMHMAADMSCRMGWVDHELVDRSVALMQKAGLP
VELPKGGGMDMDKF
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mRNA from alignment at Ecto-sp8_S_contig104547:168..359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104547.723.1 ID=mRNA_Ecto-sp8_S_contig104547.723.1|Name=mRNA_Ecto-sp8_S_contig104547.723.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104547:168..359+ (Ectocarpus species8 EcLAC_412)
CAGACTGGGCTGGGGTACGGCAAGCTCCTCCACGGAGAAGCGGTGGCAAT
CGGCATGCATATGGCGGCCGACATGTCTTGCCGCATGGGTTGGGTGGACC
ACGAGCTCGTGGACAGGAGCGTGGCGCTCATGCAGAAGGCCGGGTTACCG
GTGGAGCTGCCCAAGGGGGGCGGGATGGACATGGATAAATTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104547:168..359+

>mRNA_Ecto-sp8_S_contig104547.723.1 ID=mRNA_Ecto-sp8_S_contig104547.723.1|Name=mRNA_Ecto-sp8_S_contig104547.723.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104547:168..359+ (Ectocarpus species8 EcLAC_412)
CAGACTGGGCTGGGGTACGGCAAGCTCCTCCACGGAGAAGCGGTGGCAAT
CGGCATGCATATGGCGGCCGACATGTCTTGCCGCATGGGTTGGGTGGACC
ACGAGCTCGTGGACAGGAGCGTGGCGCTCATGCAGAAGGCCGGGTTACCG
GTGGAGCTGCCCAAGGGGGGCGGGATGGACATGGATAAATTC
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