mRNA_Ecto-sp8_S_contig10413.670.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10413.670.1
Unique NamemRNA_Ecto-sp8_S_contig10413.670.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10413.670.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 2.800e-59
Identity = 116/239 (48.54%), Postives = 158/239 (66.11%), Query Frame = 1 
Query:  145 KAGTYTLDYDTHTPPRPAEYEKLAMRQMKA---VNSKAKIEKYRVQLFFEDELTTEDVEAFNRFKLPIFVRAFYDAFPPIVRKRIDLALKLMRPKGDDFQPNYELSEKILDTLELMGFKNMGADEQEKDLQNMPDDASKGLNEKITAIRTAALVRGSEASDPIQAFRGYISKIWEYKLKYHKRQKGNKKYSTYSMVSVVPEGLLANMLYFAQWLEAHCKAVDRFLGAGHDERILIESAL 852
            KA  Y +D +        +YE+L  +Q      +   AKI+KY+VQ F+ D++   DVE FN+F+  I  RAF+ A PPIVRKRID+ L+LMR   D+F+ NY L++ ILDTL+ MGFKNMG   +  DL+NMPD+    L++ IT+IRTA LVR S A++  + F+ YI  +W YKLK H+ ++  KK   YS+V +VPE LL N +Y A WLE HCKAV++F+G GHDER LI+  L
Sbjct:  789 KADAYEMDGE--------DYERLVRKQRAGAATLEDVAKIKKYKVQCFYRDKIDANDVEDFNKFRGVIHTRAFFAALPPIVRKRIDMNLQLMRESLDEFRLNYTLAKDILDTLKKMGFKNMGIAGERLDLRNMPDETKAMLDKTITSIRTAKLVRTSRAAESREEFKCYIKSVWGYKLKSHQVKRKGKKCRVYSLVDLVPERLLRNEMYSANWLEGHCKAVNKFVGHGHDERKLIKPQL 1019
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10413.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE2.800e-5948.54Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10413contigEcto-sp8_S_contig10413:125..1048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size924
Hectar predicted targeting categoryother localisation
Exons1
Cds size924
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.670139-CDS-Ecto-sp8_S_contig10413:124..10481681143140.670139-CDS-Ecto-sp8_S_contig10413:124..1048Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10413 125..1048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10413.670.1prot_Ecto-sp8_S_contig10413.670.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10413 125..1048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10413.670.1

>prot_Ecto-sp8_S_contig10413.670.1 ID=prot_Ecto-sp8_S_contig10413.670.1|Name=mRNA_Ecto-sp8_S_contig10413.670.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=308bp
MRQLFNFYEGQPRHESLLHRRVRIHQDAAVAGPVAVIRNARQVDLPGLKA
GTYTLDYDTHTPPRPAEYEKLAMRQMKAVNSKAKIEKYRVQLFFEDELTT
EDVEAFNRFKLPIFVRAFYDAFPPIVRKRIDLALKLMRPKGDDFQPNYEL
SEKILDTLELMGFKNMGADEQEKDLQNMPDDASKGLNEKITAIRTAALVR
GSEASDPIQAFRGYISKIWEYKLKYHKRQKGNKKYSTYSMVSVVPEGLLA
NMLYFAQWLEAHCKAVDRFLGAGHDERILIESALVEFKSHETRAVNLVPN
PKRKRGD*
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mRNA from alignment at Ecto-sp8_S_contig10413:125..1048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10413.670.1 ID=mRNA_Ecto-sp8_S_contig10413.670.1|Name=mRNA_Ecto-sp8_S_contig10413.670.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=924bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10413:125..1048+ (Ectocarpus species8 EcLAC_412)
ATGCGTCAATTGTTTAACTTTTATGAAGGCCAACCACGTCACGAGAGTCT
TCTTCACAGACGGGTCCGGATTCACCAAGATGCAGCTGTAGCCGGGCCTG
TAGCCGTCATTCGGAACGCAAGACAGGTCGATTTGCCTGGATTGAAAGCA
GGGACGTACACGCTCGACTACGACACGCACACTCCGCCACGGCCTGCCGA
GTATGAAAAGCTGGCCATGAGGCAAATGAAGGCGGTGAATTCTAAAGCCA
AGATCGAGAAGTACAGGGTGCAACTTTTCTTTGAGGACGAGCTAACCACA
GAGGATGTCGAGGCATTCAACAGATTCAAGCTGCCCATATTTGTTCGCGC
ATTCTACGATGCGTTCCCGCCTATCGTGAGGAAACGGATCGACTTGGCAT
TGAAACTCATGCGCCCGAAAGGCGACGACTTTCAGCCTAACTACGAGCTC
TCCGAGAAGATACTCGACACGCTGGAGCTTATGGGCTTTAAAAATATGGG
CGCTGATGAGCAAGAAAAAGACCTCCAAAACATGCCGGACGATGCCTCGA
AGGGCCTCAATGAGAAAATCACTGCGATACGCACTGCTGCTTTAGTGCGG
GGATCGGAGGCTTCTGACCCGATCCAGGCGTTCAGGGGTTACATCAGTAA
GATATGGGAGTACAAGTTGAAGTACCACAAGCGCCAGAAAGGGAACAAGA
AATACTCGACGTACTCGATGGTCAGTGTTGTCCCAGAAGGGCTCTTGGCC
AACATGCTTTACTTTGCGCAATGGCTGGAGGCTCACTGTAAAGCGGTCGA
TAGGTTTTTGGGGGCAGGCCATGACGAGAGAATTCTCATCGAGTCGGCGC
TAGTTGAGTTCAAAAGCCACGAAACGAGGGCTGTGAACCTCGTCCCTAAC
CCGAAGCGCAAGCGTGGGGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10413:125..1048+

>mRNA_Ecto-sp8_S_contig10413.670.1 ID=mRNA_Ecto-sp8_S_contig10413.670.1|Name=mRNA_Ecto-sp8_S_contig10413.670.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10413:125..1048+ (Ectocarpus species8 EcLAC_412)
ATGCGTCAATTGTTTAACTTTTATGAAGGCCAACCACGTCACGAGAGTCT
TCTTCACAGACGGGTCCGGATTCACCAAGATGCAGCTGTAGCCGGGCCTG
TAGCCGTCATTCGGAACGCAAGACAGGTCGATTTGCCTGGATTGAAAGCA
GGGACGTACACGCTCGACTACGACACGCACACTCCGCCACGGCCTGCCGA
GTATGAAAAGCTGGCCATGAGGCAAATGAAGGCGGTGAATTCTAAAGCCA
AGATCGAGAAGTACAGGGTGCAACTTTTCTTTGAGGACGAGCTAACCACA
GAGGATGTCGAGGCATTCAACAGATTCAAGCTGCCCATATTTGTTCGCGC
ATTCTACGATGCGTTCCCGCCTATCGTGAGGAAACGGATCGACTTGGCAT
TGAAACTCATGCGCCCGAAAGGCGACGACTTTCAGCCTAACTACGAGCTC
TCCGAGAAGATACTCGACACGCTGGAGCTTATGGGCTTTAAAAATATGGG
CGCTGATGAGCAAGAAAAAGACCTCCAAAACATGCCGGACGATGCCTCGA
AGGGCCTCAATGAGAAAATCACTGCGATACGCACTGCTGCTTTAGTGCGG
GGATCGGAGGCTTCTGACCCGATCCAGGCGTTCAGGGGTTACATCAGTAA
GATATGGGAGTACAAGTTGAAGTACCACAAGCGCCAGAAAGGGAACAAGA
AATACTCGACGTACTCGATGGTCAGTGTTGTCCCAGAAGGGCTCTTGGCC
AACATGCTTTACTTTGCGCAATGGCTGGAGGCTCACTGTAAAGCGGTCGA
TAGGTTTTTGGGGGCAGGCCATGACGAGAGAATTCTCATCGAGTCGGCGC
TAGTTGAGTTCAAAAGCCACGAAACGAGGGCTGTGAACCTCGTCCCTAAC
CCGAAGCGCAAGCGTGGGGATTGA
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