mRNA_Ecto-sp8_S_contig104048.657.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104048.657.1
Unique NamemRNA_Ecto-sp8_S_contig104048.657.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104048.657.1 vs. uniprot
Match: A0A6H5L6Q6_9PHAE (Calx-beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q6_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 1.060e-98
Identity = 165/173 (95.38%), Postives = 168/173 (97.11%), Query Frame = 1 
Query:    1 KNQLFEGESDPFPVLKTTLNDTGISIDEASSAHNSEDRPAGVLFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPSEFSSINCSQVVATGIDGGLEVYVASDAVHTVRVQRAGDGSVVEAGASVSLALVDGITNQLFEGVSASFPSVKTTLADVDVAID 519
            KNQLFEGESD FPVLKTTLNDT IS+DEASSAHNSEDRPAGV FTPGAFSEPPTVELDSLVAGHEGGANVT+ALSNPLPADGNIFIEFPSEFSSINCSQVVATGIDGG+EVYVASDA HTVRVQRAGDG VVEAGASVSLALVDGITNQLFEGVSASFPSVKTTLADVDVAID
Sbjct:  719 KNQLFEGESDSFPVLKTTLNDTSISVDEASSAHNSEDRPAGVSFTPGAFSEPPTVELDSLVAGHEGGANVTVALSNPLPADGNIFIEFPSEFSSINCSQVVATGIDGGVEVYVASDAFHTVRVQRAGDGGVVEAGASVSLALVDGITNQLFEGVSASFPSVKTTLADVDVAID 891
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BLAST of mRNA_Ecto-sp8_S_contig104048.657.1 vs. uniprot
Match: D7G5B0_ECTSI (Laminin IV type A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B0_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 4.990e-98
Identity = 164/173 (94.80%), Postives = 167/173 (96.53%), Query Frame = 1 
Query:    1 KNQLFEGESDPFPVLKTTLNDTGISIDEASSAHNSEDRPAGVLFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPSEFSSINCSQVVATGIDGGLEVYVASDAVHTVRVQRAGDGSVVEAGASVSLALVDGITNQLFEGVSASFPSVKTTLADVDVAID 519
            KNQLFEGESD FPVLKTTLNDTGIS+DEASSAHNSEDRPA VLFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPSEFSSINCS VVATGIDGGLEVYVASDAVHTVRVQRAGDGSVV  G+SVSLALVDGITNQ+FEGVSASFPSVKTTL DVDVAID
Sbjct:  980 KNQLFEGESDSFPVLKTTLNDTGISVDEASSAHNSEDRPAAVLFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPSEFSSINCSHVVATGIDGGLEVYVASDAVHTVRVQRAGDGSVVVGGSSVSLALVDGITNQVFEGVSASFPSVKTTLTDVDVAID 1152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104048.657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Q6_9PHAE1.060e-9895.38Calx-beta domain-containing protein n=1 Tax=Ectoca... [more]
D7G5B0_ECTSI4.990e-9894.80Laminin IV type A domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104048contigEcto-sp8_S_contig104048:3..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score322.0
Seed ortholog evalue1.7e-85
Seed eggNOG ortholog2880.D7G5B0
Model size519
KEGG koko:K05849
KEGG TC2.A.19.3
KEGG Pathwayko04020,ko04022,ko04371,ko04740,ko04974,map04020,map04022,map04371,map04740,map04974
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.calcium:sodium antiporter activity
EggNOG OGsKOG1306@1,KOG1306@2759
Cds size519
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143139.9915144-CDS-Ecto-sp8_S_contig104048:2..5211681143139.9915144-CDS-Ecto-sp8_S_contig104048:2..521Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104048 3..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104048.657.1prot_Ecto-sp8_S_contig104048.657.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104048 3..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104048.657.1

>prot_Ecto-sp8_S_contig104048.657.1 ID=prot_Ecto-sp8_S_contig104048.657.1|Name=mRNA_Ecto-sp8_S_contig104048.657.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp
KNQLFEGESDPFPVLKTTLNDTGISIDEASSAHNSEDRPAGVLFTPGAFS
EPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPSEFSSINCSQV
VATGIDGGLEVYVASDAVHTVRVQRAGDGSVVEAGASVSLALVDGITNQL
FEGVSASFPSVKTTLADVDVAID
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mRNA from alignment at Ecto-sp8_S_contig104048:3..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104048.657.1 ID=mRNA_Ecto-sp8_S_contig104048.657.1|Name=mRNA_Ecto-sp8_S_contig104048.657.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104048:3..521+ (Ectocarpus species8 EcLAC_412)
AAGAACCAGCTGTTTGAGGGCGAGAGCGACCCCTTTCCCGTCCTGAAGAC
GACACTCAACGACACCGGTATATCCATCGACGAGGCGAGCTCTGCACACA
ACTCGGAGGATCGACCAGCGGGGGTGTTGTTCACCCCGGGAGCATTTTCG
GAGCCACCAACGGTCGAGTTGGACAGCCTTGTGGCGGGCCACGAGGGCGG
AGCGAATGTCACTCTCGCATTGTCGAACCCCTTGCCGGCTGATGGGAACA
TATTCATCGAGTTCCCAAGTGAGTTCTCTTCCATCAACTGCAGCCAGGTT
GTGGCCACGGGCATCGACGGTGGCCTGGAGGTGTACGTGGCTTCGGACGC
CGTCCACACGGTGCGGGTGCAGCGGGCCGGGGACGGTAGTGTCGTGGAAG
CGGGTGCGAGCGTGTCTCTCGCATTGGTCGACGGCATAACGAACCAGTTG
TTCGAGGGCGTGAGCGCGTCGTTTCCGTCAGTCAAAACCACTTTGGCGGA
CGTCGACGTGGCCATAGAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104048:3..521+

>mRNA_Ecto-sp8_S_contig104048.657.1 ID=mRNA_Ecto-sp8_S_contig104048.657.1|Name=mRNA_Ecto-sp8_S_contig104048.657.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104048:3..521+ (Ectocarpus species8 EcLAC_412)
AAGAACCAGCTGTTTGAGGGCGAGAGCGACCCCTTTCCCGTCCTGAAGAC
GACACTCAACGACACCGGTATATCCATCGACGAGGCGAGCTCTGCACACA
ACTCGGAGGATCGACCAGCGGGGGTGTTGTTCACCCCGGGAGCATTTTCG
GAGCCACCAACGGTCGAGTTGGACAGCCTTGTGGCGGGCCACGAGGGCGG
AGCGAATGTCACTCTCGCATTGTCGAACCCCTTGCCGGCTGATGGGAACA
TATTCATCGAGTTCCCAAGTGAGTTCTCTTCCATCAACTGCAGCCAGGTT
GTGGCCACGGGCATCGACGGTGGCCTGGAGGTGTACGTGGCTTCGGACGC
CGTCCACACGGTGCGGGTGCAGCGGGCCGGGGACGGTAGTGTCGTGGAAG
CGGGTGCGAGCGTGTCTCTCGCATTGGTCGACGGCATAACGAACCAGTTG
TTCGAGGGCGTGAGCGCGTCGTTTCCGTCAGTCAAAACCACTTTGGCGGA
CGTCGACGTGGCCATAGAT
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