mRNA_Ecto-sp8_S_contig10382.623.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 159 bits (401), Expect = 5.460e-41 Identity = 90/164 (54.88%), Postives = 104/164 (63.41%), Query Frame = 3
Query: 6 YAVGKHKDHLPDCRSERRWPS-----RLLQQS*GLSPRTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGG-AWSFYDDEALCVRVDESSDVSGRTPLSHLAV 479
+A+GK+K L D R R R L RTLLA + ASP LA S+LLEFN RWNLRMM+KNRGLPAA GGHYN+YL + IQR TADW+SS V P WPAAID V TGER RS W GE G W D++A C D SDV+GRTP+S L +
Sbjct: 638 FAIGKNKHGLTDYRCVRGTNDVEGYHRYL--------RTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDGEVWGIADNDAFCTD-DGDSDVNGRTPMSDLTL 792
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 113 bits (282), Expect = 4.680e-25 Identity = 71/158 (44.94%), Postives = 81/158 (51.27%), Query Frame = 3
Query: 6 YAVGKHKDHLPDCRSERRWPSRLLQQS*GLSPRTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGGAWSFYDDEALCVRVDESSDVSGRTPLSHLAV 479
YA+GK D L R R G LA +SASP LA S+LLEFN RWNL+MMVKNR DW+ S V P W AA+D V TGERS RS W GE AW+ EA C VD+ DV+GRTPLSHLA+
Sbjct: 930 YAIGKTTDGLVRYRCVRG-----TNDVEGYH----LASYSASPALAQSVLLEFNFRWNLKMMVKNR-----------------------DWDPSFPVFPQWQAAVDSVDTGERSGLGRSLWGGENAKAWNGAGHEASCAEVDDVGDVNGRTPLSHLAL 1055
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: D7FWS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS6_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 3.300e-21 Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 3
Query: 186 MMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRS 362
M+VKNRGLPAA GGHYN+YL +L+QR TADWE+SC VPP +PAA+D GTGERS +RS
Sbjct: 1 MLVKNRGLPAALGGHYNEYLVELVQRATADWEASCPVPPQYPAAMDPEGTGERSGLARS 59
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.420e-20 Identity = 55/124 (44.35%), Postives = 71/124 (57.26%), Query Frame = 3
Query: 102 RTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGGAWSFYDDEALCVRVDESSDVSGRTPLSHL 473
R LL+ + ASP LAHS+LLEFN RWN+RM VKNRGLP G +++Y ++IQR TA W + P W +A+D TGERS S+S W GG +A VDE + P+ L
Sbjct: 74 RRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPDNPLFPEWVSALDVADTGERSGLSQSMWGPASGG-------DAPGDLVDEQASPQHAIPMPKL 190
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.110e-18 Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 3
Query: 102 RTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGG 386
R LL+ + ASP LAHS+LLEFN RWN+RM VKNRGLP G ++++ ++IQR TA W + P W +A+D TGE+S S S W GG
Sbjct: 347 RRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 441
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.350e-18 Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 3
Query: 102 RTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGG 386
R LL+ + ASP LAHS+LLEFN RWN+RM VKNRGLP G ++++ ++IQR TA W + P W +A+D TGE+S S S W GG
Sbjct: 344 RRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 438
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5JEJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ9_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 3.380e-17 Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 2
Query: 239 VSWEADPADHGGLGVKLLRSPGV-AGRHRLSRHGREELALQELMGGRGRGGM 391
+SWE DP H GLG++L R PGV AGRHRLSRHG EELALQELMGGRGRGGM
Sbjct: 15 LSWETDPTGHDGLGIELPRPPGVVAGRHRLSRHGLEELALQELMGGRGRGGM 66
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 6.200e-16 Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 3
Query: 6 YAVGKHKDHLPDCRSERRWPS-----RLLQQS*GLSPRTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTT 269
YAVGK D L + R R R L RTLLA + ASP LA S+LLEFN RWNL+MMVKNRGLPA G HYN++L ++IQR T
Sbjct: 682 YAVGKTTDGLVNYRCVRGTNDVEGYHRYL--------RTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5L7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E8_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 3.710e-14 Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 3
Query: 150 MLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQR 263
MLLEFNL WNLRMMVKNRGLPAA GGHYN Y GKLIQR
Sbjct: 1 MLLEFNLGWNLRMMVKNRGLPAALGGHYNNYRGKLIQR 38
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 3.890e-14 Identity = 47/125 (37.60%), Postives = 65/125 (52.00%), Query Frame = 3
Query: 108 LLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGGAWSFYDDEALCVRVDESSDVSGRTPLSHLAVP 482
LL+ + ASP LAHS+LLEFN RWN++M VKNR LP GG ++++ ++IQR T W+ V +A+D TG+RS ++S G G D D G + AVP
Sbjct: 84 LLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRETTSWDLDSPVFSERVSALDAADTGQRSGLAQSMCGGADAG--------------DSGVDALGEQEMVQNAVP 194 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10382.623.1 >prot_Ecto-sp8_S_contig10382.623.1 ID=prot_Ecto-sp8_S_contig10382.623.1|Name=mRNA_Ecto-sp8_S_contig10382.623.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp MAFATAAAELRAITADPAGLLQCISTTSALDVAGVQPPVEPEDDGQEPWLback to top mRNA from alignment at Ecto-sp8_S_contig10382:3467..6265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10382.623.1 ID=mRNA_Ecto-sp8_S_contig10382.623.1|Name=mRNA_Ecto-sp8_S_contig10382.623.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2799bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10382:3467..6265+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10382:3467..6265+ >mRNA_Ecto-sp8_S_contig10382.623.1 ID=mRNA_Ecto-sp8_S_contig10382.623.1|Name=mRNA_Ecto-sp8_S_contig10382.623.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10382:3467..6265+ (Ectocarpus species8 EcLAC_412)back to top |