mRNA_Ecto-sp8_S_contig10382.623.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10382.623.1
Unique NamemRNA_Ecto-sp8_S_contig10382.623.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.460e-41
Identity = 90/164 (54.88%), Postives = 104/164 (63.41%), Query Frame = 3
Query:    6 YAVGKHKDHLPDCRSERRWPS-----RLLQQS*GLSPRTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGG-AWSFYDDEALCVRVDESSDVSGRTPLSHLAV 479
            +A+GK+K  L D R  R         R L        RTLLA + ASP LA S+LLEFN RWNLRMM+KNRGLPAA GGHYN+YL + IQR TADW+SS  V P WPAAID V TGER    RS W GE  G  W   D++A C   D  SDV+GRTP+S L +
Sbjct:  638 FAIGKNKHGLTDYRCVRGTNDVEGYHRYL--------RTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDGEVWGIADNDAFCTD-DGDSDVNGRTPMSDLTL 792          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.680e-25
Identity = 71/158 (44.94%), Postives = 81/158 (51.27%), Query Frame = 3
Query:    6 YAVGKHKDHLPDCRSERRWPSRLLQQS*GLSPRTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGGAWSFYDDEALCVRVDESSDVSGRTPLSHLAV 479
            YA+GK  D L   R  R           G      LA +SASP LA S+LLEFN RWNL+MMVKNR                       DW+ S  V P W AA+D V TGERS   RS W GE   AW+    EA C  VD+  DV+GRTPLSHLA+
Sbjct:  930 YAIGKTTDGLVRYRCVRG-----TNDVEGYH----LASYSASPALAQSVLLEFNFRWNLKMMVKNR-----------------------DWDPSFPVFPQWQAAVDSVDTGERSGLGRSLWGGENAKAWNGAGHEASCAEVDDVGDVNGRTPLSHLAL 1055          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: D7FWS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.300e-21
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 3
Query:  186 MMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRS 362
            M+VKNRGLPAA GGHYN+YL +L+QR TADWE+SC VPP +PAA+D  GTGERS  +RS
Sbjct:    1 MLVKNRGLPAALGGHYNEYLVELVQRATADWEASCPVPPQYPAAMDPEGTGERSGLARS 59          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.420e-20
Identity = 55/124 (44.35%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  102 RTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGGAWSFYDDEALCVRVDESSDVSGRTPLSHL 473
            R LL+ + ASP LAHS+LLEFN RWN+RM VKNRGLP   G  +++Y  ++IQR TA W     + P W +A+D   TGERS  S+S W    GG       +A    VDE +      P+  L
Sbjct:   74 RRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPDNPLFPEWVSALDVADTGERSGLSQSMWGPASGG-------DAPGDLVDEQASPQHAIPMPKL 190          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.110e-18
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  102 RTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGG 386
            R LL+ + ASP LAHS+LLEFN RWN+RM VKNRGLP   G  ++++  ++IQR TA W     + P W +A+D   TGE+S  S S W    GG
Sbjct:  347 RRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 441          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.350e-18
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  102 RTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGG 386
            R LL+ + ASP LAHS+LLEFN RWN+RM VKNRGLP   G  ++++  ++IQR TA W     + P W +A+D   TGE+S  S S W    GG
Sbjct:  344 RRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGG 438          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5JEJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.380e-17
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  239 VSWEADPADHGGLGVKLLRSPGV-AGRHRLSRHGREELALQELMGGRGRGGM 391
            +SWE DP  H GLG++L R PGV AGRHRLSRHG EELALQELMGGRGRGGM
Sbjct:   15 LSWETDPTGHDGLGIELPRPPGVVAGRHRLSRHGLEELALQELMGGRGRGGM 66          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.200e-16
Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 3
Query:    6 YAVGKHKDHLPDCRSERRWPS-----RLLQQS*GLSPRTLLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTT 269
            YAVGK  D L + R  R         R L        RTLLA + ASP LA S+LLEFN RWNL+MMVKNRGLPA  G HYN++L ++IQR T
Sbjct:  682 YAVGKTTDGLVNYRCVRGTNDVEGYHRYL--------RTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5L7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.710e-14
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 3
Query:  150 MLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQR 263
            MLLEFNL WNLRMMVKNRGLPAA GGHYN Y GKLIQR
Sbjct:    1 MLLEFNLGWNLRMMVKNRGLPAALGGHYNNYRGKLIQR 38          
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.890e-14
Identity = 47/125 (37.60%), Postives = 65/125 (52.00%), Query Frame = 3
Query:  108 LLACFSASPPLAHSMLLEFNLRWNLRMMVKNRGLPAAPGGHYNKYLGKLIQRTTADWESSCSVPPAWPAAID*VGTGERSWRSRSSWEGEVGGAWSFYDDEALCVRVDESSDVSGRTPLSHLAVP 482
            LL+ + ASP LAHS+LLEFN RWN++M VKNR LP   GG ++++  ++IQR T  W+    V     +A+D   TG+RS  ++S   G   G              D   D  G   +   AVP
Sbjct:   84 LLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRETTSWDLDSPVFSERVSALDAADTGQRSGLAQSMCGGADAG--------------DSGVDALGEQEMVQNAVP 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10382.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRJ6_9PHAE5.460e-4154.883'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4M0_9PHAE4.680e-2544.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWS6_ECTSI3.300e-2171.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U3_9PHAE1.420e-2044.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE1.110e-1849.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE1.350e-1849.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ9_9PHAE3.380e-1778.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Q9_ECTSI6.200e-1653.763'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5L7E8_9PHAE3.710e-1489.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP32_9PHAE3.890e-1437.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10382contigEcto-sp8_S_contig10382:3467..6265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size686
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.5298257-UTR-Ecto-sp8_S_contig10382:3466..35241681143137.5298257-UTR-Ecto-sp8_S_contig10382:3466..3524Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10382 3467..3524 +
1681143137.5597124-UTR-Ecto-sp8_S_contig10382:5985..62651681143137.5597124-UTR-Ecto-sp8_S_contig10382:5985..6265Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10382 5986..6265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.5402348-CDS-Ecto-sp8_S_contig10382:3524..35561681143137.5402348-CDS-Ecto-sp8_S_contig10382:3524..3556Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10382 3525..3556 +
1681143137.5496888-CDS-Ecto-sp8_S_contig10382:5669..59851681143137.5496888-CDS-Ecto-sp8_S_contig10382:5669..5985Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10382 5670..5985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10382.623.1prot_Ecto-sp8_S_contig10382.623.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10382 3525..5985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10382.623.1

>prot_Ecto-sp8_S_contig10382.623.1 ID=prot_Ecto-sp8_S_contig10382.623.1|Name=mRNA_Ecto-sp8_S_contig10382.623.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
MAFATAAAELRAITADPAGLLQCISTTSALDVAGVQPPVEPEDDGQEPWL
ARGAGRTLQQVSWEADPADHGGLGVKLLRSPGVAGRHRLSRHGREELALQ
ELMGGRGRGGMEFLR*
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mRNA from alignment at Ecto-sp8_S_contig10382:3467..6265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10382.623.1 ID=mRNA_Ecto-sp8_S_contig10382.623.1|Name=mRNA_Ecto-sp8_S_contig10382.623.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2799bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10382:3467..6265+ (Ectocarpus species8 EcLAC_412)
TGTAGTACGCCGTTGGCAAGCACAAGGATCACCTTCCCGACTGCAGGAGC GAACGAAGATGGCCTTCGCGACTGCTGCAGCAGAGTTAAGGTGAGATTGT GCTTCCTGATCGGAAATAAACGAGCTGGTTTGCGTGCACGAAGGCGGGGA TACCCCTGTACGTCTGTCTCTGCTGTGTGTTGCCTTGAGGCTACATACAG CAGCAGTCTAGAGGCTACAGCAGCAGTCTAGGTGTTTAGCGAGAAGGACG GCGGTGCGTAGTTTAGTTGGTGATCTCGCCAGGACGTTTGTTTGCTCTTC GTCTCTTCTGGGTCAGTCGACTGGTTTATGTGTCCGCGCACCTGAGACCG AACAACAACTGAACATCATCAATCATCAGACAACATCATCACACGGTTTG CTGGTTCAGGCAGGATCCAAACACATTCGACGCATGATCTGTACCGCAAA CACACATGGCCTGGAGGGGTTGAAGGCAAAGGGCGGTACTGGTATAGACT ATCGACTCGAAAGCAGTAGCCGTATTTTGTGTCCATGTTGTCTACATAAT TTACAAGGCATCTACAGCATCAGTAGTAGTGTAGACCACGGCGGTACAAC AGCAGTATACAGAGTAACGGTGTGCGGTAGCCCAGTCCACCCTCCGTCGC CACCGTGACGTTAACCGCTCCTGTCGTCGCGGCTCCCATCAACGGTGCCG CCGCTCCGTCCGTGAGTTCACACCCGGCCGGCCGCTGCCGCGGGGGAAAC ATGGCCGCTGGCGGTTCCCCCTCTTGCCGCCGGTGCTGCTGCGGATGCTG CTGCTCTATCTAGCCGCGAGTGCCTGCGCCCCGGCCGTCTGCCCCTCCGC CGCCGCGAGGAAAACTCTGCCGCCGGGGGTCGCCATTCTGTCAACGCTCA TACACTAGTTGCTCCACTACAATTCTCGCCGCCGGTTCTGCTACTGATGG TACCGCTATATCCTCGAGTGCCTGCACCCCGGCCGCCCCCACGGCCGGCA CCGCGGGGAAAACTCTGCTGCCGGGGCTCACCCCTCTCGCCGACGGTGCT GCCACCGATGGTACCGCTCTAGCCGCGAGTGTCTGCACCCCGGCCGCCCC CCCGGCCGGCGTCGCGGGGAAAACATGACTGCCGGGGGTCACCCCTTCGC CGGTGATGCTGCTGCCGATGGTGCCGCTCCCTCCGCGAGTGCCTGCGCCC GGCCGCCTTTCCCGCCGCCGCCGCCGCCGCCGGGGGGCACCCCCCTCACC GCCGGTGCCGCTGCGACCCAAACGACCAACATACTTAAGGCCCTGTCAGA CCATCGGGGAGAACTGCTTGGAGGAGTATTTTCATGCTATTTCTTTCGTA TATCTTCTTCTATTGTGTATCCAGCGCAGTAGTAACTACAATAGCGGGCA CATCCTATCTGCAACATGAACTGCTGTAGATACCTTTTTCGGCGTCGGAG TCCCAACCTGAGATGCTACAATATCAATTAAGGACCATGCGTTAACTCTG TAGCGACGTATGTGCTGGCGCGCCCACAGGTCTGTCACTGGGGTATGTAA GGGTATCGAAGAACTTACTGTAGCATACATACCTGCTGTACCAAATCGTC CGTAAACGAAAACGTTTGACACTGACTGCTGTACTGTAGTCGCGACCACA TGCCCAAGGAACAGCCATGCATTCTGTGGCATGAGCTGCTGCTGCTGCTG CTGCTGCTGCTGTAGTAGACTAGAGCAGTAGACCCGCACTTCAGGAGGCT GTGTTTGTGACGACGAGCGCTGTTTCGAAAGATGATTCCGCTTCGCAGGC TTTTGGAACGCAGTTGAAGCCTTCAACAGTACAGCCCTAAGATCAGCACA TCTGAGCATGCCTGCATTGCCGTGTCGAAACTCCATGATGTCCGTCACTG ACGTAGCATTTCAGGTTGGGAACCCGATAGAACGAAGCCCCTGTAACCCT TGTCCGACAAGTCGCCTGCGGCGTCTGGCTGGTATCTGGGACCATGATTT TTTTTAGCTTCTGTGATAGCTTTTGTGTTGATGTTTCTCGGCCTTTCATT TGCTCTTCAGGTTTTCAAATTGCATCCTTGGTAGGGCCTGTGCCCACGGA AGGCATCTCCGTCAGTTGCACCAGTAAGGATGTTAGAAGGTTGTAAATTC ACGGCTTCCACCCCTCTTGTCGCGTCCCAACCGCTGTTCACTTCTTACAA CAGGGCTATCACCGCGGACCCTGCTGGCCTGCTTCAGTGCATCTCCACCA CTAGCGCACTCGATGTTGCTGGAGTTCAACCTCCGGTGGAACCTGAGGAT GATGGTCAAGAACCGTGGCTTGCCCGCGGCGCCGGGAGGACACTACAACA AGTATCTTGGGAAGCTGATCCAGCGGACCACGGCGGACTGGGAGTCAAGT TGCTCCGTTCCCCCGGCGTGGCCGGCCGCCATCGACTAAGTAGGCACGGG CGAGAGGAGTTGGCGCTCCAGGAGCTCATGGGAGGGAGAGGTCGGGGGGG CATGGAGTTTCTACGATGATGAGGCGTTGTGTGTTCGTGTGGACGAAAGC AGCGATGTTAGCGGCCGAACGCCGTTGTCGCACCTAGCGGTTCCTCCAAG CCCATGCTTTCCTCGGAGCGATTCACGGCAAGGATGAGCGAAAAAATGCC AGAATCGAGGGTCCACACCAGGGAGGAGAAGAAACGCAACTTCAGAGACG ACCTGATGCTGCTGGTGGCAGGGGAACAACATGGGAGGACTCCAGCGGGA ACAACCGCTCTCCGTTTCGACCCTTAACAAAACGGGGGCGGGGCTGCGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10382:3467..6265+

>mRNA_Ecto-sp8_S_contig10382.623.1 ID=mRNA_Ecto-sp8_S_contig10382.623.1|Name=mRNA_Ecto-sp8_S_contig10382.623.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10382:3467..6265+ (Ectocarpus species8 EcLAC_412)
ATGGCCTTCGCGACTGCTGCAGCAGAGTTAAGGGCTATCACCGCGGACCC
TGCTGGCCTGCTTCAGTGCATCTCCACCACTAGCGCACTCGATGTTGCTG
GAGTTCAACCTCCGGTGGAACCTGAGGATGATGGTCAAGAACCGTGGCTT
GCCCGCGGCGCCGGGAGGACACTACAACAAGTATCTTGGGAAGCTGATCC
AGCGGACCACGGCGGACTGGGAGTCAAGTTGCTCCGTTCCCCCGGCGTGG
CCGGCCGCCATCGACTAAGTAGGCACGGGCGAGAGGAGTTGGCGCTCCAG
GAGCTCATGGGAGGGAGAGGTCGGGGGGGCATGGAGTTTCTACGATGA
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