mRNA_Ecto-sp8_S_contig103519.573.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103519.573.1
Unique NamemRNA_Ecto-sp8_S_contig103519.573.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103519.573.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.610e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   58 QAADLKGNLDTECFVFAVRHDKPKLKRVKHILDTDLHIKNCTRARSTDD 204
            +AA++KG LDTECFV AVR+DK K KRVK +LD ++HIKNCTR R  DD
Sbjct:   66 KAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDD 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103519.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXB5_ECTSI1.610e-1467.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103519contigEcto-sp8_S_contig103519:297..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score73.6
Seed ortholog evalue4.1e-11
Seed eggNOG ortholog2880.D7FXB5
Preferred nameTAF13
Model size204
KEGG koko:K00521,ko:K03127
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007275,GO:0008022,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009960,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0022607,GO:0023051,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG5248@1,KOG3901@2759
EC1.16.1.7
Cds size204
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.2127318-CDS-Ecto-sp8_S_contig103519:296..5001681143134.2127318-CDS-Ecto-sp8_S_contig103519:296..500Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103519 297..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103519.573.1prot_Ecto-sp8_S_contig103519.573.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103519 297..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103519.573.1

>prot_Ecto-sp8_S_contig103519.573.1 ID=prot_Ecto-sp8_S_contig103519.573.1|Name=mRNA_Ecto-sp8_S_contig103519.573.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=68bp
MFVSLEKSMVIDIFSSLKYQAADLKGNLDTECFVFAVRHDKPKLKRVKHI
LDTDLHIKNCTRARSTDD
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mRNA from alignment at Ecto-sp8_S_contig103519:297..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103519.573.1 ID=mRNA_Ecto-sp8_S_contig103519.573.1|Name=mRNA_Ecto-sp8_S_contig103519.573.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103519:297..500- (Ectocarpus species8 EcLAC_412)
ATGTTTGTGTCACTTGAAAAAAGCATGGTGATTGATATATTCTCATCATT
AAAATACCAGGCGGCCGACCTCAAAGGCAACCTGGATACCGAGTGCTTCG
TTTTCGCCGTTCGCCACGATAAGCCCAAGTTAAAGCGGGTCAAGCACATC
CTGGACACCGACCTGCACATCAAGAACTGTACGCGCGCGCGCTCCACAGA
CGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103519:297..500-

>mRNA_Ecto-sp8_S_contig103519.573.1 ID=mRNA_Ecto-sp8_S_contig103519.573.1|Name=mRNA_Ecto-sp8_S_contig103519.573.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103519:297..500- (Ectocarpus species8 EcLAC_412)
ATGTTTGTGTCACTTGAAAAAAGCATGGTGATTGATATATTCTCATCATT
AAAATACCAGGCGGCCGACCTCAAAGGCAACCTGGATACCGAGTGCTTCG
TTTTCGCCGTTCGCCACGATAAGCCCAAGTTAAAGCGGGTCAAGCACATC
CTGGACACCGACCTGCACATCAAGAACTGTACGCGCGCGCGCTCCACAGA
CGAC
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