mRNA_Ecto-sp8_S_contig103089.507.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103089.507.1
Unique NamemRNA_Ecto-sp8_S_contig103089.507.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: UPI000C77844F (nascent polypeptide-associated complex subunit alpha-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77844F)

HSP 1 Score: 176 bits (446), Expect = 3.100e-53
Identity = 110/148 (74.32%), Postives = 119/148 (80.41%), Query Frame = 1
Query:    1 MPEMTEIIDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVA-EGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAE 441
            MPEMTE + +KP + ++  DSGTDSDG+D  SIPELE+T    EGSA AA D + A          K+KQSRGEKKARKIMSKLGLK VTGVSRVTIRKSKNILFVI KPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFK AE
Sbjct:    1 MPEMTEALTTKPEEVNQENDSGTDSDGED--SIPELEETAAGGEGSAVAAGDDMTAG---------KSKQSRGEKKARKIMSKLGLKQVTGVSRVTIRKSKNILFVINKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKAAE 137          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: C1BSG2_LEPSM (Nascent polypeptide associated complex protein alpha subunit CG8759PBlike [Tribolium castaneum] n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=C1BSG2_LEPSM)

HSP 1 Score: 166 bits (421), Expect = 2.150e-49
Identity = 105/153 (68.63%), Postives = 123/153 (80.39%), Query Frame = 1
Query:    1 MPEMTEIIDSKPPQDDEVQD---SGTDSDGDDADSIPELEDTTVAEGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAEVPQ 450
            MPE TE++  KP +  EV+D   SG+DSD   ++S+P+L+++T    +AA     +AAAAG+ +E  SK KQSRGEKKARKIMSKLGLK VTGVSRVTIRKSKNILFVI KPD+YKNP+SDTYIVFGEAKIEDLS QAQMEAAQKFK AE PQ
Sbjct:    1 MPEQTEVLTKKPQE--EVEDDKESGSDSD---SESMPDLDEST----NAATGQSPLAAAAGV-EEPTSKAKQSRGEKKARKIMSKLGLKQVTGVSRVTIRKSKNILFVINKPDIYKNPSSDTYIVFGEAKIEDLSHQAQMEAAQKFKAAEAPQ 143          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: E9HE95_DAPPU (NAC-A/B domain-containing protein n=6 Tax=Daphnia TaxID=6668 RepID=E9HE95_DAPPU)

HSP 1 Score: 158 bits (399), Expect = 3.740e-46
Identity = 98/148 (66.22%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 MPEMTEIIDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVAEGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAEV 444
            MP++TE+    P     +QD   ++D D  DS+PELED       A      VAAAAGL +E VSK KQSRGEKKARKIMSKLGLK VTGVSRVTIRKS+NILFVI KPDVYKNPASDTYIVFGEAKIEDL+QQA M A +KFK  E+
Sbjct:    1 MPQVTELEKGAPT----IQDGSDNTDSDSDDSVPELEDA------ATGVQSQVAAAAGLPEELVSKAKQSRGEKKARKIMSKLGLKQVTGVSRVTIRKSRNILFVINKPDVYKNPASDTYIVFGEAKIEDLNQQAHMAAVEKFKAPEL 138          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: A0A6L5CLA6_9INSE (NAC-A/B domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CLA6_9INSE)

HSP 1 Score: 157 bits (398), Expect = 6.700e-46
Identity = 102/152 (67.11%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    1 MPEMTEI---IDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVAEGSAAAAVDA-VAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAEV 444
            MPE+TE+     S   + +    SGT+SD D+  SIPELED    +G    +    +AAAAGL ++ VSK KQSRGEKKARKIMSKLGLKPVTGV+RVTIRKSK+ILFVI KPDVYKNPASDTYIVFGEAKIEDLSQQAQ+ AA+KFK  EV
Sbjct:    1 MPELTELDKATASMTERREAASGSGTESDSDE--SIPELEDADKGQGQFPGSTALHMAAAAGLPEDMVSKAKQSRGEKKARKIMSKLGLKPVTGVNRVTIRKSKSILFVINKPDVYKNPASDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEV 150          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: A0A8J6H7E5_TENMO (NAC-A/B domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6H7E5_TENMO)

HSP 1 Score: 157 bits (396), Expect = 2.680e-45
Identity = 100/145 (68.97%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 MPEMTEIIDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVAEGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKN 435
            MPEMTE+     P+    Q S + +D D  + IPELED   A   A A   A  AAAGL  + VSK KQSRGEKKARKIMSKLGLKPVTGV+RVTIRKSKNILFVI KPDVYKNP SDTYIVFGEAKIEDLSQQAQ+ AA+KFK+
Sbjct:    1 MPEMTEVEKPVVPETKPEQ-SASSTDSDSEEEIPELEDAGAANAGATAFPGA--AAAGLPIDMVSKAKQSRGEKKARKIMSKLGLKPVTGVNRVTIRKSKNILFVINKPDVYKNPVSDTYIVFGEAKIEDLSQQAQVAAAEKFKD 142          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: V5GCS8_ANOGL (Nascent polypeptide-associated complex subunit alpha n=3 Tax=Cucujiformia TaxID=41088 RepID=V5GCS8_ANOGL)

HSP 1 Score: 155 bits (393), Expect = 3.820e-45
Identity = 103/149 (69.13%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    1 MPEMTEI-----IDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVAEGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFK 432
            MPEMTE+      ++KP Q     +S TDSD D+   IPELED   A   +AA   A  AAAGL  + VSK KQSRGEKKARKIMSKLGLKPV GVSRVTIRKSKNILFVI KPDVYKNP SDTYIVFGEAKIEDLS QAQ+ AA+KFK
Sbjct:    1 MPEMTEVEKPVVAEAKPEQ----SESSTDSDSDEE--IPELEDAGTANAGSAAFPGA--AAAGLPIDMVSKAKQSRGEKKARKIMSKLGLKPVQGVSRVTIRKSKNILFVINKPDVYKNPVSDTYIVFGEAKIEDLSTQAQVAAAEKFK 141          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: A0A553NVR3_TIGCA (NAC-A/B domain-containing protein (Fragment) n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NVR3_TIGCA)

HSP 1 Score: 154 bits (390), Expect = 4.340e-45
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 1
Query:  157 VAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAEVPQ 450
            +AAAAGL ++ VSK KQSRGEKKARKIMSKLGLK V GVSRVTIRKSKNILFVI KPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFK AE PQ
Sbjct:   14 LAAAAGLNEDLVSKAKQSRGEKKARKIMSKLGLKNVAGVSRVTIRKSKNILFVITKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKAAEAPQ 111          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: D6WPS6_TRICA (Nascent polypeptide-associated complex subunit alpha-like Protein n=2 Tax=Polyphaga TaxID=41084 RepID=D6WPS6_TRICA)

HSP 1 Score: 155 bits (392), Expect = 5.260e-45
Identity = 99/144 (68.75%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 MPEMTEIIDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVAEGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFK 432
            MPEMTE+     P+    Q S + +D +  D IPELED   A    +A   A  AAAGL  + VSK KQSRGEKKARKIMSKLGLKPVTGV+RVTIRKSKNILFVI KPDVYKNP SDTYIVFGEAKIEDLSQQAQ+ AA+KFK
Sbjct:    1 MPEMTEVEKPVVPETKPEQ-SASSTDSESEDEIPELEDAGAANSGTSAFPGA--AAAGLPIDMVSKAKQSRGEKKARKIMSKLGLKPVTGVNRVTIRKSKNILFVINKPDVYKNPVSDTYIVFGEAKIEDLSQQAQVAAAEKFK 141          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: A0A6P4ZKD6_BRABE (nascent polypeptide-associated complex subunit alpha-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZKD6_BRABE)

HSP 1 Score: 155 bits (392), Expect = 5.740e-45
Identity = 98/152 (64.47%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    1 MPEMTEI----IDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVAEGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAEV 444
            MPE+TE+    +++KP + ++V    T+SD DD  S+PELED    EG   +  + +A  AG+ +E VSK KQSR EKKARK MSKLGLK  TGVSRVTIRKSKNILFVI KPDVYK+PASDTYIVFGEAKIEDLSQQAQM AA+KFK  E+
Sbjct:    1 MPELTEVDMAEVETKPAEQNKVSSEDTESDSDD--SLPELEDA--GEGLPTSQQEQMAQMAGIQEEPVSKAKQSRQEKKARKAMSKLGLKQFTGVSRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQMAAAEKFKAPEM 148          
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Match: A0A7R8D1A1_LEPSM (Transcription factor BTF3 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8D1A1_LEPSM)

HSP 1 Score: 166 bits (421), Expect = 6.710e-45
Identity = 105/153 (68.63%), Postives = 123/153 (80.39%), Query Frame = 1
Query:    1 MPEMTEIIDSKPPQDDEVQD---SGTDSDGDDADSIPELEDTTVAEGSAAAAVDAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSKNILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAEVPQ 450
            MPE TE++  KP +  EV+D   SG+DSD   ++S+P+L+++T    +AA     +AAAAG+ +E  SK KQSRGEKKARKIMSKLGLK VTGVSRVTIRKSKNILFVI KPD+YKNP+SDTYIVFGEAKIEDLS QAQMEAAQKFK AE PQ
Sbjct:   25 MPEQTEVLTKKPQE--EVEDDKESGSDSD---SESMPDLDEST----NAATGQSPLAAAAGV-EEPTSKAKQSRGEKKARKIMSKLGLKQVTGVSRVTIRKSKNILFVINKPDIYKNPSSDTYIVFGEAKIEDLSHQAQMEAAQKFKAAEAPQ 167          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103089.507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C77844F3.100e-5374.32nascent polypeptide-associated complex subunit alp... [more]
C1BSG2_LEPSM2.150e-4968.63Nascent polypeptide associated complex protein alp... [more]
E9HE95_DAPPU3.740e-4666.22NAC-A/B domain-containing protein n=6 Tax=Daphnia ... [more]
A0A6L5CLA6_9INSE6.700e-4667.11NAC-A/B domain-containing protein n=1 Tax=Ephemera... [more]
A0A8J6H7E5_TENMO2.680e-4568.97NAC-A/B domain-containing protein n=1 Tax=Tenebrio... [more]
V5GCS8_ANOGL3.820e-4569.13Nascent polypeptide-associated complex subunit alp... [more]
A0A553NVR3_TIGCA4.340e-4588.78NAC-A/B domain-containing protein (Fragment) n=1 T... [more]
D6WPS6_TRICA5.260e-4568.75Nascent polypeptide-associated complex subunit alp... [more]
A0A6P4ZKD6_BRABE5.740e-4564.47nascent polypeptide-associated complex subunit alp... [more]
A0A7R8D1A1_LEPSM6.710e-4568.63Transcription factor BTF3 n=1 Tax=Lepeophtheirus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103089contigEcto-sp8_S_contig103089:78..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start1
Seed ortholog score160.6
Seed ortholog evalue5.6e-37
Seed eggNOG ortholog6669.EFX69936
Preferred nameNacalpha
Model size450
KEGG koko:K03626
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0009987,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0044703,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051704
Exons1
EggNOG free text desc.Nascent polypeptide-associated complex
EggNOG OGs39C57@33154,3BB6N@33208,3CRB7@33213,41Z3Z@6656,COG1308@1,KOG2239@2759
Cds size450
COG Functional cat.K
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.7855337-CDS-Ecto-sp8_S_contig103089:77..5271681143129.7855337-CDS-Ecto-sp8_S_contig103089:77..527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103089 78..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103089.507.1prot_Ecto-sp8_S_contig103089.507.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103089 78..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103089.507.1

>prot_Ecto-sp8_S_contig103089.507.1 ID=prot_Ecto-sp8_S_contig103089.507.1|Name=mRNA_Ecto-sp8_S_contig103089.507.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=150bp
MPEMTEIIDSKPPQDDEVQDSGTDSDGDDADSIPELEDTTVAEGSAAAAV
DAVAAAAGLGDEGVSKNKQSRGEKKARKIMSKLGLKPVTGVSRVTIRKSK
NILFVIQKPDVYKNPASDTYIVFGEAKIEDLSQQAQMEAAQKFKNAEVPQ
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mRNA from alignment at Ecto-sp8_S_contig103089:78..527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103089.507.1 ID=mRNA_Ecto-sp8_S_contig103089.507.1|Name=mRNA_Ecto-sp8_S_contig103089.507.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103089:78..527+ (Ectocarpus species8 EcLAC_412)
ATGCCAGAGATGACAGAAATCATTGACTCCAAGCCCCCTCAGGATGATGA GGTCCAGGACTCAGGAACTGATTCCGATGGAGACGATGCTGACTCCATCC CTGAGTTGGAGGACACTACAGTTGCCGAGGGATCTGCTGCTGCTGCTGTT GATGCCGTGGCTGCCGCTGCCGGGCTCGGAGATGAAGGTGTCAGCAAGAA CAAGCAAAGCAGAGGCGAGAAAAAAGCTAGGAAAATCATGTCCAAGCTTG GCCTCAAGCCGGTGACTGGAGTGTCTCGCGTCACGATTAGGAAATCAAAG AACATCCTATTCGTGATCCAGAAGCCAGATGTTTACAAGAACCCAGCTTC AGACACATACATCGTCTTTGGTGAGGCTAAGATCGAGGACTTGTCCCAGC AAGCACAGATGGAAGCAGCTCAGAAGTTCAAGAATGCAGAGGTTCCTCAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103089:78..527+

>mRNA_Ecto-sp8_S_contig103089.507.1 ID=mRNA_Ecto-sp8_S_contig103089.507.1|Name=mRNA_Ecto-sp8_S_contig103089.507.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103089:78..527+ (Ectocarpus species8 EcLAC_412)
ATGCCAGAGATGACAGAAATCATTGACTCCAAGCCCCCTCAGGATGATGA
GGTCCAGGACTCAGGAACTGATTCCGATGGAGACGATGCTGACTCCATCC
CTGAGTTGGAGGACACTACAGTTGCCGAGGGATCTGCTGCTGCTGCTGTT
GATGCCGTGGCTGCCGCTGCCGGGCTCGGAGATGAAGGTGTCAGCAAGAA
CAAGCAAAGCAGAGGCGAGAAAAAAGCTAGGAAAATCATGTCCAAGCTTG
GCCTCAAGCCGGTGACTGGAGTGTCTCGCGTCACGATTAGGAAATCAAAG
AACATCCTATTCGTGATCCAGAAGCCAGATGTTTACAAGAACCCAGCTTC
AGACACATACATCGTCTTTGGTGAGGCTAAGATCGAGGACTTGTCCCAGC
AAGCACAGATGGAAGCAGCTCAGAAGTTCAAGAATGCAGAGGTTCCTCAA
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