prot_Ecto-sp8_S_contig9861.31682.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9861.31682.1
Unique Nameprot_Ecto-sp8_S_contig9861.31682.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length361
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9861.31682.1 vs. uniprot
Match: D7FS80_ECTSI (B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS80_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 4.890e-72
Identity = 270/276 (97.83%), Postives = 270/276 (97.83%), Query Frame = 0 
Query:   87 MGQGLASAASTSASARGPTNSSVLSAGEGGRSPEEKAQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AKKKRLMAQMVKAAGQRQHWKEAIVLFDQMQEKGVPTVKAAYGAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMDAILAIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTAGSARKWRLANA 361
            M QGLASAASTSASARGPTNSSVLSAGEGGRSPEEKAQAKK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKKKRLMAQMVKAAGQRQHWKEAIVLFDQMQEKGVPTVKAAYGAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDMDAILAIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTAGSARKWRLANA
Sbjct:    1 MRQGLASAASTSASARGPTNSSVLSAGEGGRSPEEKAQAKKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKKKRLMAQMVKAAGQRQHWKEAIVLFDQMQEKGVPTVKAAYGAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDMDAILAIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTAGSARKWRLANA 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9861.31682.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS80_ECTSI4.890e-7297.83B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..140
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 181..300
coord: 281..350
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 175..359
e-value: 1.8E-29
score: 105.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 181..206
e-value: 0.07
score: 13.4
coord: 249..276
e-value: 0.028
score: 14.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 251..278
e-value: 6.2E-4
score: 17.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 7.794
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 314..348
score: 6.544
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 9.558
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 6.982
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 279..313
score: 7.07

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9861contigEcto-sp8_S_contig9861:3..5109 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9861.31682.1mRNA_Ecto-sp8_S_contig9861.31682.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9861 3..5109 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9861.31682.1 ID=prot_Ecto-sp8_S_contig9861.31682.1|Name=mRNA_Ecto-sp8_S_contig9861.31682.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=361bp
GPSWNNGGLAGRRVPTAGVAVSRSGRAVAVCRAGTGRHSRPPHRRRPLYS
SSRSRLRDGGPNRAAASRGVEGGGGGEGGDAEESLRMGQGLASAASTSAS
ARGPTNSSVLSAGEGGRSPEEKAQAKKEEAKAAKAAAAAAAAAAVVAALG
SPAKAVATATTAGGNGGNKGSAKKKRLMAQMVKAAGQRQHWKEAIVLFDQ
MQEKGVPTVKAAYGAALRACAKGADWERGTQLLDNYLEEGYELEEGVVNN
AVKACCRAGRPSEAEAILAKSLERGLVPEVSLFTAVMNACYTVGDMDAIL
AIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTA
GSARKWRLANA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat