prot_Ecto-sp8_S_contig9815.31604.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9815.31604.1
Unique Nameprot_Ecto-sp8_S_contig9815.31604.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length130
Homology
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: D8LBD3_ECTSI (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD3_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 9.240e-88
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL 129
            MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHI ALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL
Sbjct:   52 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHITALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL 180          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: A0A835ZB99_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB99_9STRA)

HSP 1 Score: 215 bits (547), Expect = 2.580e-69
Identity = 102/127 (80.31%), Postives = 113/127 (88.98%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDD 127
            MRQ+T+VSRD LLSLGTCFGKFTK+ KFRL I  LDYISQYAK+KVWVKP AEMSFLYGNHV KSGL RITE TP+Y G VVYSM+D+P+GFGVAAQ TE+C+DLD  AVVVLHQAD+GEYLRVEDD
Sbjct:   52 MRQSTNVSRDNLLSLGTCFGKFTKTKKFRLGITCLDYISQYAKHKVWVKPGAEMSFLYGNHVAKSGLARITEATPQYAGVVVYSMNDIPMGFGVAAQATEYCRDLDAAAVVVLHQADIGEYLRVEDD 178          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: B5Y3S4_PHATC (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3S4_PHATC)

HSP 1 Score: 208 bits (529), Expect = 1.420e-66
Identity = 98/129 (75.97%), Postives = 113/129 (87.60%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLR-VEDDL 128
            M+ ATS+ R+ LL +GTC GKFTK+GKFRLHI AL+YISQYAKYKVWVKPSAEMSFLYGNHV K+GL R+TENTP+Y G VVYSMSD+PLGFGVAAQ TE C+ LDPT  VVLHQAD+GEYLR +E+D+
Sbjct:   52 MKSATSIGREHLLHVGTCMGKFTKTGKFRLHITALEYISQYAKYKVWVKPSAEMSFLYGNHVSKNGLARMTENTPQYSGVVVYSMSDIPLGFGVAAQSTEHCQQLDPTGNVVLHQADIGEYLRGLEEDM 180          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: A0A7S3PW11_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW11_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.430e-65
Identity = 98/129 (75.97%), Postives = 113/129 (87.60%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLR-VEDDL 128
            M+ + SV+RD LLS GTC GKFTKSGKFRLHI ALDY+SQYA+YKVWVKPSAEMSFLYGN+V KSGL RITE+TP+Y G VVYSMSD+PLGFGVA+Q T+ CKDL+P   VVLHQAD+GEYLR +EDD+
Sbjct:   53 MKASNSVARDNLLSFGTCLGKFTKSGKFRLHITALDYLSQYAQYKVWVKPSAEMSFLYGNNVLKSGLARITESTPQYAGIVVYSMSDIPLGFGVASQGTDACKDLEPMGNVVLHQADIGEYLRGMEDDI 181          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: A0A7S2S5A9_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5A9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.920e-64
Identity = 95/129 (73.64%), Postives = 112/129 (86.82%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLR-VEDDL 128
            M+ + S+SRD +L  GTC GKF+KSGKFRLH+ ALDY+SQYAKYKVWVKPSAEMSFLYGN++ KSGL RITE+TP+Y G VVY+MSD+PLGFGV+AQ TE CKDL+P   VVLHQAD+GEYLR VEDD+
Sbjct:   52 MKYSASISRDNILHFGTCLGKFSKSGKFRLHVTALDYLSQYAKYKVWVKPSAEMSFLYGNNILKSGLARITESTPQYAGVVVYNMSDLPLGFGVSAQNTEACKDLEPMGNVVLHQADIGEYLRGVEDDM 180          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: A0A812WVB5_SYMMI (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WVB5_SYMMI)

HSP 1 Score: 202 bits (515), Expect = 1.920e-64
Identity = 92/128 (71.88%), Postives = 111/128 (86.72%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDL 128
            M+ A ++ R+ L+SLGTCFGKFTK+ KFRLH++ LDYI+QYAKYKVWVK  AEMSFLYGN+V K+GL RIT+  P+YGG VV+SMSD+PLGFGVAAQPTE+CKDL+P A VVLHQ D+GEYLRVED +
Sbjct:   52 MKLAGNIGREHLISLGTCFGKFTKNNKFRLHVSCLDYIAQYAKYKVWVKTGAEMSFLYGNNVNKAGLARITDGIPQYGGVVVFSMSDIPLGFGVAAQPTEYCKDLEPMANVVLHQGDIGEYLRVEDGM 179          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: A0A3B4ELK9_PYGNA (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Characoidei TaxID=1489739 RepID=A0A3B4ELK9_PYGNA)

HSP 1 Score: 199 bits (507), Expect = 1.190e-63
Identity = 91/128 (71.09%), Postives = 110/128 (85.94%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDL 128
            +R AT++SRD L+S+GTCFGKFTK+ KFRLHI ALD+++ YAKYKVWVKP AE SFLYGNH+ KSGLGRITENTP+Y G VVYSM+DVPLGFGVAA+ T+ C+  DP ++VV HQAD+GEY+R ED L
Sbjct:   23 LRLATNMSRDKLVSVGTCFGKFTKTQKFRLHITALDFLAPYAKYKVWVKPGAEQSFLYGNHIMKSGLGRITENTPQYQGVVVYSMADVPLGFGVAAKTTQECRKADPMSIVVFHQADIGEYIRSEDTL 150          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: A0A1S3HGN7_LINUN (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGN7_LINUN)

HSP 1 Score: 200 bits (508), Expect = 2.160e-63
Identity = 90/128 (70.31%), Postives = 109/128 (85.16%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDL 128
            M++A ++SR+ L+S GTCFGKFTKSGKFRLHI ALD+++ YAKYK+WVKPSAE  FLYG+HV KSGLGRITENTP+Y G +VYSMSD+PLGFGVAA+ TE C+ +DP  VV  HQAD+GEY+R ED L
Sbjct:   52 MKKAANISRENLVSFGTCFGKFTKSGKFRLHITALDFLAPYAKYKIWVKPSAEQQFLYGHHVMKSGLGRITENTPQYQGVIVYSMSDLPLGFGVAAKSTEDCRRVDPMTVVTFHQADIGEYIRSEDTL 179          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR)

HSP 1 Score: 199 bits (507), Expect = 3.060e-63
Identity = 92/128 (71.88%), Postives = 110/128 (85.94%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDL 128
            ++ AT+++RD L+SLGTCFGKFTK+ KFRLH+ ALDY++ YAKYKVWVKP AE SFLYGNHV KSGLGRITENT +Y G VVYSM+D+PLGFGVAA+ T+ C+ LDP A+VV HQADVGEY+R ED L
Sbjct:   52 LKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179          
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Match: A0A8C4T854_ERPCA (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4T854_ERPCA)

HSP 1 Score: 199 bits (507), Expect = 3.060e-63
Identity = 92/128 (71.88%), Postives = 110/128 (85.94%), Query Frame = 0
Query:    1 MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDL 128
            ++ +T++SRD L+S+GTCFGKFTK+ KFRLH+ ALDY++ YAKYKVWVKP AE SFLYGNHV KSGLGRITENT +Y G VVYSM+DVPLGFGVAA+ T+ C+ LDP A+VV HQAD+GEYLR ED L
Sbjct:   52 LKLSTNISRDKLISVGTCFGKFTKTMKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKLDPMAIVVFHQADIGEYLRSEDTL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9815.31604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD3_ECTSI9.240e-8899.2260S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A835ZB99_9STRA2.580e-6980.3160S ribosome subunit biogenesis protein NIP7 homol... [more]
B5Y3S4_PHATC1.420e-6675.9760S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A7S3PW11_9STRA3.430e-6575.9760S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A7S2S5A9_9STRA1.920e-6473.6460S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A812WVB5_SYMMI1.920e-6471.8860S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A3B4ELK9_PYGNA1.190e-6371.0960S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A1S3HGN7_LINUN2.160e-6370.3160S ribosome subunit biogenesis protein NIP7 homol... [more]
NIP7_XENTR3.060e-6371.8860S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A8C4T854_ERPCA3.060e-6371.8860S ribosome subunit biogenesis protein NIP7 homol... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 44..119
e-value: 7.5E-10
score: 48.7
IPR002478PUA domainPROSITEPS50890PUAcoord: 43..119
score: 11.902
IPR005155UPF0113, PUA domainPFAMPF03657UPF0113coord: 45..123
e-value: 6.7E-23
score: 80.8
IPR040598UPF0113, pre-PUA domainPFAMPF17833UPF0113_Ncoord: 3..32
e-value: 5.6E-9
score: 36.5
NoneNo IPR availableGENE3D3.10.450.220coord: 1..42
e-value: 1.3E-14
score: 55.9
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..128
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..128
NoneNo IPR availableSUPERFAMILY88802Pre-PUA domaincoord: 2..43
IPR036974PUA domain superfamilyGENE3D2.30.130.10coord: 43..129
e-value: 1.2E-41
score: 142.5
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 44..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9815contigEcto-sp8_S_contig9815:3171..4182 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9815.31604.1mRNA_Ecto-sp8_S_contig9815.31604.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9815 3159..5225 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9815.31604.1 ID=prot_Ecto-sp8_S_contig9815.31604.1|Name=mRNA_Ecto-sp8_S_contig9815.31604.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
MRQATSVSRDTLLSLGTCFGKFTKSGKFRLHIAALDYISQYAKYKVWVKP
SAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTE
FCKDLDPTAVVVLHQADVGEYLRVEDDLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR005155UPF0113_PUA
IPR040598UPF0113_N
IPR036974PUA_sf
IPR015947PUA-like_sf