prot_Ecto-sp8_S_contig9767.31527.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9767.31527.1
Unique Nameprot_Ecto-sp8_S_contig9767.31527.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length290
Homology
BLAST of mRNA_Ecto-sp8_S_contig9767.31527.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 476 bits (1224), Expect = 1.890e-150
Identity = 256/295 (86.78%), Postives = 262/295 (88.81%), Query Frame = 0
Query:    1 MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLIAEEKSGP------SMMYREPSFKCRLELPSFMGMPTIDTAVLVDEHFWSKSQARAAVSYMAVVQMLEKGYIDKRLNPTRTKDRLVVEKRRGYDPVLVEGKEARIKAKMPIPRPVAMGILPTPGVEFDAAWMAAWMAADGNGASNDGGGSTNSTSEEAKSPEADAPSETAATAGSPPSPGAFGDRSEG 289
            MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDD ERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLIAEEKSGP      +MMYREPSFKCRLELPSFMGMPTIDTAVLVDEHFWSKSQARAAVS++AVVQMLEKGYID+RLNPTRTKDRLVVEKRRGYDPVLVEGKEAR+KAKMPIPRPVAMGILPTPGVEFDAAWMAAWMAADGNGASN+                      TAATAGSPPS  A GD SEG
Sbjct:  678 MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDRERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLIAEEKSGPCEAPFGAMMYREPSFKCRLELPSFMGMPTIDTAVLVDEHFWSKSQARAAVSFLAVVQMLEKGYIDERLNPTRTKDRLVVEKRRGYDPVLVEGKEARMKAKMPIPRPVAMGILPTPGVEFDAAWMAAWMAADGNGASNEXXXXXXXXXXXXXXXXXXXXXXTAATAGSPPSTCAVGDGSEG 972          
BLAST of mRNA_Ecto-sp8_S_contig9767.31527.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 1.320e-102
Identity = 197/290 (67.93%), Postives = 205/290 (70.69%), Query Frame = 0
Query:    1 MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLIAEEKSGPSMMYREPSFKCRLELPSFMGMPTIDTAVLVDEHFWSKSQARAAVSYMAVVQMLEKGYIDKRLNPTRTKDRLVVEKRRGYDPVLVEGKEARIKAKMPIPRPVAMGILPTPGVEFDAAWMAAWMAADGNGASNDGGGSTNSTSEEAKSPEADAPSETAATAGSPPSPGAFGDRSEGE 290
            MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLI                 CRLELPSFMGMPTIDTA+L DEHFWSKSQAR+AVS++AVVQMLEKGYIDKRLNPTR K                                                  AAW+     G    G GS +   +EAKSPEADAPSETAATAGSPP PGAFGD S+GE
Sbjct:  474 MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLI-----------------CRLELPSFMGMPTIDTAMLADEHFWSKSQARSAVSFLAVVQMLEKGYIDKRLNPTRGK--------------------------------------------------AAWLRPRSGG----GEGSPHQGQDEAKSPEADAPSETAATAGSPPFPGAFGDGSQGE 692          
BLAST of mRNA_Ecto-sp8_S_contig9767.31527.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 286 bits (731), Expect = 3.000e-85
Identity = 150/239 (62.76%), Postives = 186/239 (77.82%), Query Frame = 0
Query:    1 MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLIAEEKSGPSMMYREPSFKCRLELPSFMGMPTIDTAVLVDEHFWSKSQARAAVSYMAVVQMLEKGYIDKRLNPTRTKDRLVVEKRRGYDPVL---VEGKEARIKAKMPIPRPVAMGILPTPGVEFDAAWMAAW 236
            MDKIK SRSLIHTRGRARSKGGKFVIMVED D  ER+R+  +L ESE+IK+FQLG EK S+RVPLR +HPNMVH IE SGAVVDMDMAT L+ + LS  GCDF PLL+ E+   P+      SFKCRLELPSF+ M TIDT  +  E F +KS+AR+A  Y+A+++MLEKGY+D+RLNP++  DRL VE R+ +DPV+   VE +E+R KA +P+PRP+AMGILPTP V+ + A +AAW
Sbjct:   12 MDKIKNSRSLIHTRGRARSKGGKFVIMVEDQDQAERERILQILRESENIKKFQLGSEKPSLRVPLRQAHPNMVHRIERSGAVVDMDMATCLLFETLSTTGCDFQPLLVVEDSIQPA------SFKCRLELPSFLDMGTIDTDSIPGERFSTKSEARSAACYLALLKMLEKGYLDERLNPSQKSDRLAVENRKTFDPVVPLEVEVRESREKATLPVPRPIAMGILPTPAVDVEQARLAAW 244          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9767.31527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQM7_9PHAE1.890e-15086.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI1.320e-10267.93Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A2S1PRV6_FUCSE3.000e-8562.76Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005034Dicer dimerisation domainPFAMPF03368Dicer_dimercoord: 120..183
e-value: 1.4E-5
score: 25.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9767contigEcto-sp8_S_contig9767:1585..5597 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9767.31527.1mRNA_Ecto-sp8_S_contig9767.31527.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9767 1585..5617 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9767.31527.1 ID=prot_Ecto-sp8_S_contig9767.31527.1|Name=mRNA_Ecto-sp8_S_contig9767.31527.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=290bp
MDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIK
RFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVG
CDFHPLLIAEEKSGPSMMYREPSFKCRLELPSFMGMPTIDTAVLVDEHFW
SKSQARAAVSYMAVVQMLEKGYIDKRLNPTRTKDRLVVEKRRGYDPVLVE
GKEARIKAKMPIPRPVAMGILPTPGVEFDAAWMAAWMAADGNGASNDGGG
STNSTSEEAKSPEADAPSETAATAGSPPSPGAFGDRSEGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005034Dicer_dimerisation_dom