prot_Ecto-sp8_S_contig96350.31315.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig96350.31315.1
Unique Nameprot_Ecto-sp8_S_contig96350.31315.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length41
Homology
BLAST of mRNA_Ecto-sp8_S_contig96350.31315.1 vs. uniprot
Match: D8LQ11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ11_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.800e-17
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0
Query:    1 PPAEFYSRLVSEIDAVGWSHLVSMDSLLTSIQLRERDAAGK 41
            PPAEFYSRLVSEIDAVGWSHLVSMDSLLTS+QLRERDAAG+
Sbjct:   98 PPAEFYSRLVSEIDAVGWSHLVSMDSLLTSVQLRERDAAGR 138          
BLAST of mRNA_Ecto-sp8_S_contig96350.31315.1 vs. uniprot
Match: A0A835YLD4_9STRA (WD-repeat region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.180e-7
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    2 PAEFYSRLVSEIDAVGWSHLVSMDSLLTSIQLRERDAAGK 41
            PA +YSRLV+EID VGW HLV++   L+ +QLR  DAAG+
Sbjct:  110 PAAYYSRLVAEIDKVGWEHLVTISERLSHLQLRVSDAAGR 149          
BLAST of mRNA_Ecto-sp8_S_contig96350.31315.1 vs. uniprot
Match: A0A2P6NXE8_9EUKA (E3 ubiquitin-protein ligase FANCL n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXE8_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.030e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 PPAEFYSRLVSEIDAVGWSHLVSMDSLLTSIQLRERDAAGK 41
            PPAEFYSRL+ E+D +GW+ LV +D  LT+IQL   D+  +
Sbjct:   98 PPAEFYSRLMMEMDTIGWNRLVHIDKTLTNIQLNTYDSRNR 138          
BLAST of mRNA_Ecto-sp8_S_contig96350.31315.1 vs. uniprot
Match: L8HG57_ACACA (Fanconi anemia, complementation group L family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HG57_ACACA)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    5 FYSRLVSEIDAVGWSHLVSMDSLLTSIQLRERDAAGK 41
            FYSR+V+EIDAVGWS LVS +  LT + LR  D AG+
Sbjct:  102 FYSRVVAEIDAVGWSKLVSANDSLTRLSLRTTDEAGR 138          
BLAST of mRNA_Ecto-sp8_S_contig96350.31315.1 vs. uniprot
Match: UPI001F07E3F9 (E3 ubiquitin-protein ligase FANCL isoform X1 n=2 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07E3F9)

HSP 1 Score: 48.9 bits (115), Expect = 1.750e-5
Identity = 18/41 (43.90%), Postives = 33/41 (80.49%), Query Frame = 0
Query:    1 PPAEFYSRLVSEIDAVGWSHLVSMDSLLTSIQLRERDAAGK 41
            PP ++YS+L+SEI+A+GW  L+S+D+   +++LR  D++G+
Sbjct:  102 PPPQYYSQLISEIEALGWEKLLSIDTEFCTLKLRAEDSSGR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96350.31315.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQ11_ECTSI1.800e-1795.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLD4_9STRA2.180e-760.00WD-repeat region-domain-containing protein n=1 Tax... [more]
A0A2P6NXE8_9EUKA1.030e-653.66E3 ubiquitin-protein ligase FANCL n=1 Tax=Planopro... [more]
L8HG57_ACACA1.280e-562.16Fanconi anemia, complementation group L family pro... [more]
UPI001F07E3F91.750e-543.90E3 ubiquitin-protein ligase FANCL isoform X1 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019162Fanconi anemia complex, subunit FancL, WD-repeat containing domainPFAMPF09765WD-3coord: 1..40
e-value: 2.3E-7
score: 30.5
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 4..41
e-value: 9.3E-10
score: 40.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96350contigEcto-sp8_S_contig96350:252..374 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96350.31315.1mRNA_Ecto-sp8_S_contig96350.31315.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig96350 252..374 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig96350.31315.1 ID=prot_Ecto-sp8_S_contig96350.31315.1|Name=mRNA_Ecto-sp8_S_contig96350.31315.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=41bp
PPAEFYSRLVSEIDAVGWSHLVSMDSLLTSIQLRERDAAGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019162FancL_WD-rpt_cont_dom
IPR016135UBQ-conjugating_enzyme/RWD