prot_Ecto-sp8_S_contig96266.31299.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig96266.31299.1
Unique Nameprot_Ecto-sp8_S_contig96266.31299.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length56
Homology
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: D7FUU1_ECTSI (Replication protein A subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU1_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.180e-26
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    5 SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKV 55
            SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVK+
Sbjct:  127 SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKL 177          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.110e-26
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    5 SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKV 55
            SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVK+
Sbjct:  376 SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKL 426          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A6U0TYW6_9STRA (Replication protein A subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TYW6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.140e-12
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    6 RAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKV 55
            +  K+L KR+L+LVDD+ TEI +TLWGD A+ DG +W  NPV+A KGVKV
Sbjct:  360 KLSKELFKRDLVLVDDSNTEIQMTLWGDRAREDGGQWMSNPVIAVKGVKV 409          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A7S2RLC2_9STRA (Replication protein A subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLC2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.640e-11
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:    6 RAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKV 55
            R+G  L KR+L +VDD+ TE+ LTLWGD A+ D S+W+G P++A K VKV
Sbjct:  321 RSGNTLHKRDLTVVDDSGTEVTLTLWGDKAQEDDSQWDGEPILAIKKVKV 370          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: W7T7F5_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7F5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.650e-11
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    3 TRSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKV 55
            T  + G++++KR L L DDT TE+ LT+WG+ A     +WE +P+VAFKGVKV
Sbjct:  393 TTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKV 445          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A4D9CR27_9STRA (Replication protein A subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR27_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.670e-11
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    3 TRSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKV 55
            T  + G++++KR L L DDT TE+ LT+WG+ A     +WE +P+VAFKGVKV
Sbjct:  321 TTKKDGREVEKRELTLCDDTGTEVRLTVWGERASKQPEQWENHPIVAFKGVKV 373          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A813CA97_9DINO (Rpa1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CA97_9DINO)

HSP 1 Score: 60.5 bits (145), Expect = 2.750e-9
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    5 SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKVQ 56
            S+ GK L KR L L DD+   + +T+WGD AK + S +EGNPVVA KGV V+
Sbjct:   52 SKDGKDLVKRTLTLADDSGISMQVTIWGDRAKKEDSEFEGNPVVAMKGVSVK 103          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A812W065_SYMMI (RPA1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812W065_SYMMI)

HSP 1 Score: 60.5 bits (145), Expect = 2.840e-9
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    5 SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKVQ 56
            S+ GK L KR L L DD+   + +T+WGD AK + S +EGNPVVA KGV V+
Sbjct:  231 SKDGKDLVKRTLTLADDSGISMQVTIWGDRAKKEDSEFEGNPVVAMKGVSVK 282          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A812Q238_9DINO (Replication protein A subunit n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812Q238_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 7.200e-9
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    5 SRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAFKGVKVQ 56
            S+ GK L KR L L DD+   + +T+WGD AK + S +EGNPVVA KGV V+
Sbjct:  186 SKDGKDLVKRTLTLADDSGISMQVTIWGDRAKKEDSVFEGNPVVAMKGVSVK 237          
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Match: A0A7S2V6G1_9STRA (Replication protein A subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.820e-9
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    3 TRSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNP-VVAFKGVKV 55
            ++ + G+QL KR+LILVDD+  E+ LT+W +MAK DGS W GNP +V  K V+V
Sbjct:  154 SQKQGGRQLQKRDLILVDDSGAEVKLTVWNEMAK-DGSMWVGNPTLVGAKNVRV 206          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96266.31299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU1_ECTSI2.180e-2698.04Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A6H5JTK0_9PHAE6.110e-2698.04Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A6U0TYW6_9STRA2.140e-1260.00Replication protein A subunit n=1 Tax=Pinguiococcu... [more]
A0A7S2RLC2_9STRA6.640e-1156.00Replication protein A subunit n=1 Tax=Rhizochromul... [more]
W7T7F5_9STRA6.650e-1150.94Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A4D9CR27_9STRA6.670e-1150.94Replication protein A subunit n=1 Tax=Nannochlorop... [more]
A0A813CA97_9DINO2.750e-953.85Rpa1 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A812W065_SYMMI2.840e-953.85RPA1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A812Q238_9DINO7.200e-953.85Replication protein A subunit n=4 Tax=Symbiodinium... [more]
A0A7S2V6G1_9STRA9.820e-953.70Replication protein A subunit n=1 Tax=Fibrocapsa j... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031657Replication protein A, OB domainPFAMPF16900REPA_OB_2coord: 6..56
e-value: 7.3E-13
score: 48.3
NoneNo IPR availableGENE3D2.40.50.140coord: 1..56
e-value: 3.8E-12
score: 47.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96266contigEcto-sp8_S_contig96266:11..178 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96266.31299.1mRNA_Ecto-sp8_S_contig96266.31299.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig96266 11..178 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig96266.31299.1 ID=prot_Ecto-sp8_S_contig96266.31299.1|Name=mRNA_Ecto-sp8_S_contig96266.31299.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=56bp
MPTRSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGNPVVAF
KGVKVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031657REPA_OB_2
IPR012340NA-bd_OB-fold