prot_Ecto-sp8_S_contig95299.31134.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig95299.31134.1
Unique Nameprot_Ecto-sp8_S_contig95299.31134.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length46
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig95299.31134.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.930e-19
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0 
Query:    1 QCFCGVDSDYSRHGTSTTCNMECTGYPSESCGGDFSIEVRIL 42
            +CFCGVDSDYSRHGTSTTCNMECTGYPSESCGG FSIEV  L
Sbjct:  570 ECFCGVDSDYSRHGTSTTCNMECTGYPSESCGGVFSIEVYEL 611
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95299.31134.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6T7_ECTSI5.930e-1990.48WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002889Carbohydrate-binding WSCPROSITEPS51212WSCcoord: 1..43
score: 7.891

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95299contigEcto-sp8_S_contig95299:2..139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95299.31134.1mRNA_Ecto-sp8_S_contig95299.31134.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig95299 2..139 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig95299.31134.1 ID=prot_Ecto-sp8_S_contig95299.31134.1|Name=mRNA_Ecto-sp8_S_contig95299.31134.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=46bp
QCFCGVDSDYSRHGTSTTCNMECTGYPSESCGGDFSIEVRILSPC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002889WSC_carb-bd