prot_Ecto-sp8_S_contig9521.31118.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig9521.31118.1
Unique Name	prot_Ecto-sp8_S_contig9521.31118.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	604

Homology

[Close]

BLAST of mRNA_Ecto-sp8_S_contig9521.31118.1 vs. uniprot
Match: D8LTF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF4_ECTSI)

HSP 1 Score: 938 bits (2424), Expect = 0.000e+0
Identity = 466/488 (95.49%), Postives = 475/488 (97.34%), Query Frame = 0

Query:  116 MPGEAANDEFELNEDRSPAEWMRVRDTTGDAFLWYTVMLEIASACCSIVFIASHDEDQLSWKTDCWGRWTSLSDAEDVQFVEFDTHIGWQQYGKVDKLGLLSELSESTAVMGSLAGGMHGLVIIIACVFXXXSSSALWLSYFDFCCGRQASTHEGKVGPKEGQQTKPTMRDHPLVLARDCHRWMFVMAASYILAGLWCFGVGCIGFYVVIMGDFTDGLQDTISGWGESVSCTEPQTSPRYGFFANGLSILLFFGGGTIILYKTYVSDRELSEAVEMWKNDRAEMAEMEARLAMIRKKEDYKAQVASAAASAASPVPIFKSRKSQNNSLSSFSPSPTAASSRNGHHTNPSDLGDMLPLSPPDLVSLPSSAGTASTAKGWDGRHKRMATKAAFSPKDLDHDEQSVGSTSNTPRDPRQSPSLAFLESSLLQSPEPQVSNIDRDLEHGSGSAAAPVDDDLPPPPGWEVRNTPMGDKFWVNIATKNVSWDRPT 603
            MPGEAANDEFELNEDRSPAEWMRV DTTGDAFLWYTVMLEIASACCSIV+I SHDEDQL WKTDCWGRWTSLSDAEDVQFVEFDTHIGWQQYGKVDKLGLLSELSESTAVMGSLAGGMHGLVIIIACVFXXXSSSALWLSYFDFCC RQ  THEGKVGPKEGQ+TKP MRDHPLVLARDCHRWMFVMAASYILAGLWCFGVGCIGFYVVIMGDFTDGLQDTISGWGESVSCTEPQTSPRYGFFANGLSILLFFGGGTIILYKTYVSDRELSEAVEMWKNDRAEMAEMEARLAMIRKKEDYKAQVASAAASAASPVPIFKSRKSQNN+ SSFSPSPTAASSRNG+H NPSDL DMLPLSPPDLVS PSSAGTASTA+GWDGRHKRMATKAAFSPKDL+HDEQSVGST++TPRDPRQSPSL+FLESSLLQSPEPQVSNIDRDLE GSGSAAAPVDDDLPPPPGWEVR TPMGDKFWVNIATKNVSWDRPT
Sbjct:    1 MPGEAANDEFELNEDRSPAEWMRVGDTTGDAFLWYTVMLEIASACCSIVYITSHDEDQLLWKTDCWGRWTSLSDAEDVQFVEFDTHIGWQQYGKVDKLGLLSELSESTAVMGSLAGGMHGLVIIIACVFXXXSSSALWLSYFDFCCSRQTPTHEGKVGPKEGQKTKPAMRDHPLVLARDCHRWMFVMAASYILAGLWCFGVGCIGFYVVIMGDFTDGLQDTISGWGESVSCTEPQTSPRYGFFANGLSILLFFGGGTIILYKTYVSDRELSEAVEMWKNDRAEMAEMEARLAMIRKKEDYKAQVASAAASAASPVPIFKSRKSQNNAPSSFSPSPTAASSRNGYHANPSDLDDMLPLSPPDLVSPPSSAGTASTAEGWDGRHKRMATKAAFSPKDLEHDEQSVGSTADTPRDPRQSPSLSFLESSLLQSPEPQVSNIDRDLELGSGSAAAPVDDDLPPPPGWEVRTTPMGDKFWVNIATKNVSWDRPT 488

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig9521.31118.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig9521.31118.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LTF4_ECTSI	0.000e+0	95.49	WW domain-containing protein n=2 Tax=Ectocarpus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.20.70.10		coord: 560..603 e-value: 2.0E-7 score: 32.4
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 224..247
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 147..167
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..146
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 298..325
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 168..223
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 357..376
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 326..356
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 377..603
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 248..297
None	No IPR available	TMHMM	TMhelix		coord: 235..257
None	No IPR available	TMHMM	TMhelix		coord: 146..168
None	No IPR available	TMHMM	TMhelix		coord: 354..376
None	No IPR available	TMHMM	TMhelix		coord: 303..325
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 571..603 score: 13.043
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 566..602

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig9521	contig	Ecto-sp8_S_contig9521:3309..7134 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig9521.31118.1	mRNA_Ecto-sp8_S_contig9521.31118.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig9521 3309..7134 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig9521.31118.1 ID=prot_Ecto-sp8_S_contig9521.31118.1|Name=mRNA_Ecto-sp8_S_contig9521.31118.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=604bp
MSKADAVGGWSLFPDKETTPAQVGAAPESGAGNHSNETSAATPGVAVRPQ
KSFNSPGEQGSDRLSLGRGKQNEKKGVALLKSKAAPSPLRSGVHFKEGDD
LEAARGTQPPTTVGAMPGEAANDEFELNEDRSPAEWMRVRDTTGDAFLWY
TVMLEIASACCSIVFIASHDEDQLSWKTDCWGRWTSLSDAEDVQFVEFDT
HIGWQQYGKVDKLGLLSELSESTAVMGSLAGGMHGLVIIIACVFFFFSSS
ALWLSYFDFCCGRQASTHEGKVGPKEGQQTKPTMRDHPLVLARDCHRWMF
VMAASYILAGLWCFGVGCIGFYVVIMGDFTDGLQDTISGWGESVSCTEPQ
TSPRYGFFANGLSILLFFGGGTIILYKTYVSDRELSEAVEMWKNDRAEMA
EMEARLAMIRKKEDYKAQVASAAASAASPVPIFKSRKSQNNSLSSFSPSP
TAASSRNGHHTNPSDLGDMLPLSPPDLVSLPSSAGTASTAKGWDGRHKRM
ATKAAFSPKDLDHDEQSVGSTSNTPRDPRQSPSLAFLESSLLQSPEPQVS
NIDRDLEHGSGSAAAPVDDDLPPPPGWEVRNTPMGDKFWVNIATKNVSWD
RPT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom
IPR036020	WW_dom_sf