prot_Ecto-sp8_S_contig9489.31050.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9489.31050.1
Unique Nameprot_Ecto-sp8_S_contig9489.31050.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length115
Homology
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.650e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
Query:   65 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT
Sbjct:   64 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 114          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: A0A448Z717_9STRA (Sm domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z717_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.270e-22
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 0
Query:   67 QTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            QTGG KRSPSDFLK+VLGRP +VKLNSGI+YRGVL CLDGY+NIAMEQT
Sbjct:   20 QTGGKKRSPSDFLKSVLGRPAIVKLNSGIEYRGVLACLDGYLNIAMEQT 68          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: B4FCE3_MAIZE (Sm-like protein LSM6A n=20 Tax=Poaceae TaxID=4479 RepID=B4FCE3_MAIZE)

HSP 1 Score: 87.4 bits (215), Expect = 3.110e-20
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0
Query:   65 PAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            P   GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+L CLDGYMNIAMEQT
Sbjct:    9 PGSGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 59          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 5.800e-20
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            K +PSDFLKTVLGRPVVVKLNSG+DYRGVL CLDGYMNIAMEQT
Sbjct:   30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQT 73          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: A0A0G4IMQ5_PLABS (Sm domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMQ5_PLABS)

HSP 1 Score: 85.9 bits (211), Expect = 7.920e-20
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 0
Query:   72 KRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            KRSP+DFLKTVLGRPV VKLNSG++YRGVL CLDGYMNIAMEQT
Sbjct:    3 KRSPADFLKTVLGRPVYVKLNSGVEYRGVLACLDGYMNIAMEQT 46          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: I1I9Y0_BRADI (Sm domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=I1I9Y0_BRADI)

HSP 1 Score: 86.3 bits (212), Expect = 9.630e-20
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:   66 AQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            A +GG  ++PSDFLK++ GRPVVVKLNSG+DYRGVL CLDGYMNIAMEQT
Sbjct:   13 AGSGGPVKTPSDFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQT 62          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: A0A7S3HE42_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE42_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.480e-19
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0
Query:   65 PAQTGG---GKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            PA  G    GKR+PSDF+K VLGRPV+VKLN+G DYRGVL CLDGYMNIAMEQT
Sbjct:   14 PAGAGAMSTGKRAPSDFIKQVLGRPVIVKLNNGTDYRGVLACLDGYMNIAMEQT 67          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: A0A0D9VGA6_9ORYZ (Sm domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VGA6_9ORYZ)

HSP 1 Score: 85.5 bits (210), Expect = 1.600e-19
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0
Query:   69 GGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+L CLDGYMNIAMEQT
Sbjct:   14 GGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 60          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: I1IX44_BRADI (Sm domain-containing protein n=10 Tax=cellular organisms TaxID=131567 RepID=I1IX44_BRADI)

HSP 1 Score: 85.5 bits (210), Expect = 1.880e-19
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0
Query:   69 GGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+L CLDGYMNIAMEQT
Sbjct:   15 GGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 61          
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Match: K3YB50_SETIT (Sm domain-containing protein n=7 Tax=Petrosaviidae TaxID=1437197 RepID=K3YB50_SETIT)

HSP 1 Score: 85.5 bits (210), Expect = 1.880e-19
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0
Query:   69 GGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQT 115
            GG  ++PSDFLK++ GRPVVVKLNSG+DYRG+L CLDGYMNIAMEQT
Sbjct:   15 GGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 61          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9489.31050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE1.650e-27100.00Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A448Z717_9STRA4.270e-2285.71Sm domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
B4FCE3_MAIZE3.110e-2074.51Sm-like protein LSM6A n=20 Tax=Poaceae TaxID=4479 ... [more]
A0A7S2IZG2_9EUKA5.800e-2090.91Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0G4IMQ5_PLABS7.920e-2088.64Sm domain-containing protein n=1 Tax=Plasmodiophor... [more]
I1I9Y0_BRADI9.630e-2078.00Sm domain-containing protein n=2 Tax=Poaceae TaxID... [more]
A0A7S3HE42_9STRA1.480e-1975.93Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0D9VGA6_9ORYZ1.600e-1978.72Sm domain-containing protein n=1 Tax=Leersia perri... [more]
I1IX44_BRADI1.880e-1978.72Sm domain-containing protein n=10 Tax=cellular org... [more]
K3YB50_SETIT1.880e-1978.72Sm domain-containing protein n=7 Tax=Petrosaviidae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 67..115
e-value: 9.0E-17
score: 62.4
NoneNo IPR availablePANTHERPTHR11021:SF7coord: 64..115
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 77..114
e-value: 4.0E-8
score: 32.8
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 64..115
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 75..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9489contigEcto-sp8_S_contig9489:3803..5531 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9489.31050.1mRNA_Ecto-sp8_S_contig9489.31050.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9489 3803..5531 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9489.31050.1 ID=prot_Ecto-sp8_S_contig9489.31050.1|Name=mRNA_Ecto-sp8_S_contig9489.31050.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=115bp
MTDTTTPPPPPPPKEAEDASKGQENGGEEEKEEDVAMPPAPAPPAASAAA
AAPAATVAAVAVAAPAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRGV
LVCLDGYMNIAMEQT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf