prot_Ecto-sp8_S_contig94825.31035.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig94825.31035.1
Unique Nameprot_Ecto-sp8_S_contig94825.31035.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length41
Homology
BLAST of mRNA_Ecto-sp8_S_contig94825.31035.1 vs. uniprot
Match: D7FJ93_ECTSI (Signal recognition particle subunit SRP72 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ93_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.200e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    3 GKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQ 41
            GKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQ
Sbjct:  610 GKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQ 648          
BLAST of mRNA_Ecto-sp8_S_contig94825.31035.1 vs. uniprot
Match: A0A835YI58_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI58_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.500e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0
Query:    1 AAGKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQ 41
            A GK+DPTKP   PDPERWIPR  R+Y KRGRKRNK +GAQ
Sbjct:  629 ARGKLDPTKPALLPDPERWIPRKQRSYAKRGRKRNKLLGAQ 669          
BLAST of mRNA_Ecto-sp8_S_contig94825.31035.1 vs. uniprot
Match: A0A7S4ILR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILR4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-6
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0
Query:    1 AAGKIDPTKPVPKPDPERWIPRSHRAYGKRGRK 33
            A G+I P  P PKPDPERWIP+S R+Y KRGR+
Sbjct:  686 AEGRIKPGAPAPKPDPERWIPKSQRSYNKRGRR 718          
BLAST of mRNA_Ecto-sp8_S_contig94825.31035.1 vs. uniprot
Match: A0A5D6XQ47_9STRA (Signal recognition particle subunit SRP72 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ47_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.390e-5
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0
Query:   14 PDPERWIPRSHRAYGKRGRK-RNKFVGAQ 41
            PDPERW+P+  R+YGKRGR+ RN+FVGAQ
Sbjct:  542 PDPERWVPKKQRSYGKRGRRGRNRFVGAQ 570          
BLAST of mRNA_Ecto-sp8_S_contig94825.31035.1 vs. uniprot
Match: A0A484EC02_BRELC (Signal recognition particle subunit SRP72 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EC02_BRELC)

HSP 1 Score: 47.0 bits (110), Expect = 8.380e-5
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0
Query:   14 PDPERWIPRSHRAYGKRGRK-RNKFVGAQ 41
            PDPERWI R  R+YGKRGR+ RN+FVGAQ
Sbjct:  581 PDPERWISRKQRSYGKRGRRGRNRFVGAQ 609          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94825.31035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJ93_ECTSI4.200e-18100.00Signal recognition particle subunit SRP72 n=2 Tax=... [more]
A0A835YI58_9STRA2.500e-1173.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4ILR4_9STRA3.640e-666.67Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A5D6XQ47_9STRA2.390e-572.41Signal recognition particle subunit SRP72 n=1 Tax=... [more]
A0A484EC02_BRELC8.380e-575.86Signal recognition particle subunit SRP72 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94825contigEcto-sp8_S_contig94825:444..566 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94825.31035.1mRNA_Ecto-sp8_S_contig94825.31035.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig94825 444..566 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig94825.31035.1 ID=prot_Ecto-sp8_S_contig94825.31035.1|Name=mRNA_Ecto-sp8_S_contig94825.31035.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=41bp
AAGKIDPTKPVPKPDPERWIPRSHRAYGKRGRKRNKFVGAQ
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