prot_Ecto-sp8_S_contig9456.30987.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9456.30987.1
Unique Nameprot_Ecto-sp8_S_contig9456.30987.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length411
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9456.30987.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 621 bits (1602), Expect = 1.110e-217
Identity = 339/356 (95.22%), Postives = 342/356 (96.07%), Query Frame = 0 
Query:    1 MAKANKAPIGTLETPXXXXXXXTASLGGQSEGSPHSNDTLDRDTDQPQGQHHLHQQRQSLSCGGQREGSSIGSASQGIQRLEEADASGRGASSSSSLVPSFPGHLDFAAEDVAVFECQGKNSSTWVMAAVAVERAPPTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPYTSLRKDAIAHKEGYVSAAEGAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSADANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE 356
            MAKANKAPIGTLETP XXX   TASLGGQSEGSPHSNDTLDRDTDQPQGQHHL QQRQS SCGGQREGSSIGSASQGIQRLEEAD+SG      SSL PSFPGHLDFAAEDVAVFECQGKNSSTWVMAAVAVERAPPTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVP+TSLRKDAIAHKEGYVSAAE AVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSA+ANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE
Sbjct:  255 MAKANKAPIGTLETPPXXXAT-TASLGGQSEGSPHSNDTLDRDTDQPQGQHHLQQQRQSQSCGGQREGSSIGSASQGIQRLEEADSSGXXXXXXSSLAPSFPGHLDFAAEDVAVFECQGKNSSTWVMAAVAVERAPPTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPFTSLRKDAIAHKEGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE 609
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9456.30987.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM1_ECTSI1.110e-21795.22Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 346..366
IPR015320DNA topoisomerase VI, subunit B, transducerPFAMPF09239Topo-VIb_transcoord: 158..279
e-value: 3.0E-5
score: 23.9
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 120..354
e-value: 7.0E-10
score: 40.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9456contigEcto-sp8_S_contig9456:253..5589 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9456.30987.1mRNA_Ecto-sp8_S_contig9456.30987.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9456 241..5866 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9456.30987.1 ID=prot_Ecto-sp8_S_contig9456.30987.1|Name=mRNA_Ecto-sp8_S_contig9456.30987.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=411bp
MAKANKAPIGTLETPPPPPPATTASLGGQSEGSPHSNDTLDRDTDQPQGQ
HHLHQQRQSLSCGGQREGSSIGSASQGIQRLEEADASGRGASSSSSLVPS
FPGHLDFAAEDVAVFECQGKNSSTWVMAAVAVERAPPTRDQGTFTQQADR
GETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSAR
VRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPYT
SLRKDAIAHKEGYVSAAEGAVRQGLLSLSNRESGGFRSAAEAAKDMMQED
LIPLAASSVASMVSRSADANFQKKCLQALGVGHEYVQERRLSDLLRFELQ
ENIRQEEERRVAATARAAARTAEEAGKKKKGKKFGKEKKRTNPEDDGESS
SQQAEGRMKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015320TopoVI_B_transducer
IPR014721Ribosomal_S5_D2-typ_fold_subgr