prot_Ecto-sp8_S_contig94502.30978.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig94502.30978.1
Unique Nameprot_Ecto-sp8_S_contig94502.30978.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length82
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94502.30978.1 vs. uniprot
Match: D8LPI7_ECTSI (Putative thaumatin, pathogenesis-related protein (PR-5) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 7.940e-18
Identity = 56/82 (68.29%), Postives = 60/82 (73.17%), Query Frame = 0 
Query:    4 PYGV--FFTAIVLLGATVGKAAECDCAAQT-ESPPTXXXXXXXXXXXXXXXXXXXTETRTIVIKNVCSFDLDMGFTGGYAGP 82
            P+ +   FTA+VLLG TVGKAAECDCA +T ES P XXXXXXX             ETRTIVIKNVCSFDLDMGFTGGYAGP
Sbjct:    2 PFSIRSIFTALVLLGPTVGKAAECDCAVKTPESRPXXXXXXXX------------AETRTIVIKNVCSFDLDMGFTGGYAGP 71
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BLAST of mRNA_Ecto-sp8_S_contig94502.30978.1 vs. uniprot
Match: Q8QKV0_ESV1K (EsV-1-169 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV0_ESV1K)

HSP 1 Score: 77.4 bits (189), Expect = 7.260e-15
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0 
Query:    9 FTAIVLLGATVGKAAECDCAAQTESPPTXXXXXXXXXXXXXXXXXXXTETRTIVIKNVCSFDLDMGFTGGYAG 81
            F AIVLLGA VGKAAEC+CA +T +   XXXXXXXXXXXXXXXXXXX ETRTIVIKNVCSFDLDMGFTGGYAG
Sbjct:    9 FAAIVLLGARVGKAAECNCATKTPTS-XXXXXXXXXXXXXXXXXXXXXETRTIVIKNVCSFDLDMGFTGGYAG 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94502.30978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPI7_ECTSI7.940e-1868.29Putative thaumatin, pathogenesis-related protein (... [more]
Q8QKV0_ESV1K7.260e-1584.93EsV-1-169 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..82
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.812

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94502contigEcto-sp8_S_contig94502:209..454 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94502.30978.1mRNA_Ecto-sp8_S_contig94502.30978.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig94502 209..454 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig94502.30978.1 ID=prot_Ecto-sp8_S_contig94502.30978.1|Name=mRNA_Ecto-sp8_S_contig94502.30978.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=82bp
CRFPYGVFFTAIVLLGATVGKAAECDCAAQTESPPTSPPTSPPTSPPTSP
PMSPPTETRTIVIKNVCSFDLDMGFTGGYAGP
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