prot_Ecto-sp8_S_contig94296.30944.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp8_S_contig94296.30944.1
Unique Name	prot_Ecto-sp8_S_contig94296.30944.1
Type	polypeptide
Organism	Ectocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length	89

Homology

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: A0A6H5LCC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCC1_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.200e-57
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            LTKQPDCIKFG MRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKG+SGPHIILVPKSTLSNWLNELKRWCPALR
Sbjct:  253 LTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALR 341

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.200e-53
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            LTKQPDCIKFG MRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR
Sbjct:  250 LTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 338

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: A0A7S3UY81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY81_HETAK)

HSP 1 Score: 154 bits (390), Expect = 3.630e-47
Identity = 69/89 (77.53%), Postives = 80/89 (89.89%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            L  QP CI+ GTMR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+LAYM EYK ++GPH++L+PKSTLSNW+NE KR+CPA+R
Sbjct:   13 LLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILAYMREYKNVTGPHLVLLPKSTLSNWMNEFKRFCPAIR 101

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA)

HSP 1 Score: 163 bits (413), Expect = 6.930e-45
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            LT QP CI FG +RHYQLEGLNWMIRLN NGINGILADEMGLGKTLQSIS+LAYM+E+KGI GPHI+LVPKSTLSNW+NE  RWCP LR
Sbjct:  273 LTAQPACITFGKLRHYQLEGLNWMIRLNANGINGILADEMGLGKTLQSISILAYMYEHKGIRGPHIVLVPKSTLSNWMNEFARWCPVLR 361

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: A0A7S3UXF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF4_HETAK)

HSP 1 Score: 150 bits (379), Expect = 9.130e-45
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            L  QP CI+ GTMR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+L Y  EY+ I GPHI+LVPKSTLSNW+NE +RWCP +R
Sbjct:   13 LLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILGYTMEYRSIRGPHIVLVPKSTLSNWMNEFQRWCPDIR 101

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: K8F373_9CHLO (SNF2 super family n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F373_9CHLO)

HSP 1 Score: 160 bits (404), Expect = 1.090e-43
Identity = 69/89 (77.53%), Postives = 80/89 (89.89%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            LT QP CIKFGTMR YQ+EGLNWMI+L D GINGILADEMGLGKTLQ+IS+L Y+HEY+GI+GPH+++VPKSTL NW+NE KRWCP LR
Sbjct:  104 LTVQPSCIKFGTMRQYQIEGLNWMIKLFDQGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHLVVVPKSTLGNWMNEFKRWCPVLR 192

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: A0A5B8MZL2_9CHLO (SNF2-like helicase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZL2_9CHLO)

HSP 1 Score: 159 bits (401), Expect = 2.840e-43
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            LT QP CIKFGTMR YQL+GLNWMI L DNGINGILADEMGLGKTLQ+IS+L Y+HE++GI+GPH+++VPKSTL NW+NE KRWCP +R
Sbjct:  175 LTVQPSCIKFGTMRDYQLQGLNWMIHLYDNGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHLVIVPKSTLHNWMNEFKRWCPVIR 263

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: K3WB29_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB29_GLOUD)

HSP 1 Score: 157 bits (397), Expect = 9.900e-43
Identity = 68/89 (76.40%), Postives = 83/89 (93.26%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            +T+QP+CIKFGTM+ YQLEGLNWMIRL+D+G+NGILADEMGLGKTLQSIS+LAY+ E +GI GPHII+VPKST+ NW+ ELKRWCP++R
Sbjct:  151 ITQQPNCIKFGTMKPYQLEGLNWMIRLHDSGVNGILADEMGLGKTLQSISLLAYLREARGIEGPHIIIVPKSTVGNWMRELKRWCPSIR 239

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: A0A8J9S4J9_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S4J9_PHATR)

HSP 1 Score: 147 bits (371), Expect = 1.070e-42
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            LTKQP  IKFGT++ YQLE LNWMI L++ G+NGILADEMGLGKTLQSISVLAY  E+  I GPH+I VPKSTLSNW+NELKRWCP+LR
Sbjct:   29 LTKQPTSIKFGTLKPYQLEALNWMIHLSEKGLNGILADEMGLGKTLQSISVLAYHWEFLRIQGPHLICVPKSTLSNWMNELKRWCPSLR 117

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BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Match: A0A8K1CCV9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCV9_PYTOL)

HSP 1 Score: 157 bits (396), Expect = 1.350e-42
Identity = 68/89 (76.40%), Postives = 81/89 (91.01%), Query Frame = 0

Query:    1 LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR 89
            +T+QP CIKFGTM+ YQLEGLNWM+RL+D G+NGILADEMGLGKTLQSIS+LAY+ E +GI GPHII+VPKST+ NW+ ELKRWCPA+R
Sbjct:  195 ITRQPQCIKFGTMKPYQLEGLNWMVRLHDAGVNGILADEMGLGKTLQSISLLAYLREERGIEGPHIIIVPKSTVGNWMRELKRWCPAIR 283

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot

BLAST of mRNA_Ecto-sp8_S_contig94296.30944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LCC1_9PHAE	3.200e-57	97.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FV68_ECTSI	1.200e-53	98.88	Probable chromatin remodelling complex ATPase chai...	[more]
A0A7S3UY81_HETAK	3.630e-47	77.53	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A835YGX5_9STRA	6.930e-45	83.15	Putative chromatin remodelling complex ATPase chai...	[more]
A0A7S3UXF4_HETAK	9.130e-45	76.40	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
K8F373_9CHLO	1.090e-43	77.53	SNF2 super family n=1 Tax=Bathycoccus prasinos Tax...	[more]
A0A5B8MZL2_9CHLO	2.840e-43	76.40	SNF2-like helicase n=1 Tax=Chloropicon primus TaxI...	[more]
K3WB29_GLOUD	9.900e-43	76.40	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A8J9S4J9_PHATR	1.070e-42	76.40	Hypothetical protein (Fragment) n=3 Tax=Phaeodacty...	[more]
A0A8K1CCV9_PYTOL	1.350e-42	76.40	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 29..87 e-value: 2.9E-16 score: 59.1
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 1..89 e-value: 1.3E-36 score: 127.8
None	No IPR available	PANTHER	PTHR10799:SF979		coord: 1..89
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 1..89
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 25..89 score: 10.107
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..87

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp8_S_contig94296	contig	Ecto-sp8_S_contig94296:2..596 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species8 EcLAC_412 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp8_S_contig94296.30944.1	mRNA_Ecto-sp8_S_contig94296.30944.1	Ectocarpus species8 EcLAC_412	mRNA	Ecto-sp8_S_contig94296 2..596 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp8_S_contig94296.30944.1 ID=prot_Ecto-sp8_S_contig94296.30944.1|Name=mRNA_Ecto-sp8_S_contig94296.30944.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=89bp
LTKQPDCIKFGTMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSIS
VLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000330	SNF2_N
IPR038718	SNF2-like_sf
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase