prot_Ecto-sp8_S_contig9421.30939.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9421.30939.1
Unique Nameprot_Ecto-sp8_S_contig9421.30939.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length183
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9421.30939.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 117..140
e-value: 18.0
score: 11.1
coord: 60..84
e-value: 22.0
score: 10.4
coord: 12..36
e-value: 9.3
score: 13.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..181
e-value: 1.8E-52
score: 180.4
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 13..73
e-value: 4.7E-11
score: 42.3
NoneNo IPR availablePANTHERPTHR27008:SF192coord: 47..182
NoneNo IPR availablePANTHERPTHR27008:SF192coord: 1..123
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 1..123
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 47..182
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 3..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9421contigEcto-sp8_S_contig9421:532..7219 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9421.30939.1mRNA_Ecto-sp8_S_contig9421.30939.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9421 532..7219 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9421.30939.1 ID=prot_Ecto-sp8_S_contig9421.30939.1|Name=mRNA_Ecto-sp8_S_contig9421.30939.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=183bp
LPGCIPPDIGVLSSLRVVHLQNNQLTGTIPASIGELSSLEELQLQHNNFS
GSIPATIGRLSSIRVLALSHNQLTGAIPPEIGLLASSLVALALDCNRLTG
EKLDKRTGALPAEIGRLTSLQDLRLHSNRLTGNVPAEFGGLGAVRVMMLG
ENQFTAGPIPAEIGRAAALEVLDIQKNQLTSKL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt