prot_Ecto-sp8_S_contig9392.30887.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9392.30887.1
Unique Nameprot_Ecto-sp8_S_contig9392.30887.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length483
Homology
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 880 bits (2275), Expect = 0.000e+0
Identity = 467/484 (96.49%), Postives = 469/484 (96.90%), Query Frame = 0
Query:    1 MSYEDEGDDVFGDAVPEGEAGVGEDDYGDAGGXXXXXXXXXXXXXXXXXXXXRGYEDGAAGGXXXEGLGLGXXXXXX-YDPDAAYGAGGLMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 483
            MSYEDEGDDVFGDAVPEGEAGVGEDDY D G XXXXXXX   XXXXXXXXX RGYE+GAAG XXXEGLGLG       YDPDAAYGAGGL+DDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK
Sbjct:    1 MSYEDEGDDVFGDAVPEGEAGVGEDDYADGGXXXXXXXXDNMXXXXXXXXXERGYENGAAGXXXXEGLGLGEGVEEEEYDPDAAYGAGGLVDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 484          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 877 bits (2267), Expect = 1.760e-308
Identity = 473/483 (97.93%), Postives = 475/483 (98.34%), Query Frame = 0
Query:    1 MSYEDEGDDVFGDAVPEGEAGVGEDDYGDAGGXXXXXXXXXXXXXXXXXXXXRGYEDGAAGGXXXEGLGLGXXXXXXYDPDAAYGAGGLMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 483
            MSYEDEGDDVFGDAVPEGEAGV EDDYGD   XXXXXXXXXXXXXXXXXXX RGYE+GAAGGXXXEGL   XXXXXXYDPDAAYGAGGLMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQE+GEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK
Sbjct:    1 MSYEDEGDDVFGDAVPEGEAGVEEDDYGDGXXXXXXXXXXXXXXXXXXXXXERGYENGAAGGXXXEGLXXXXXXXXXYDPDAAYGAGGLMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEDGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 483          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 563 bits (1451), Expect = 5.990e-187
Identity = 272/394 (69.04%), Postives = 325/394 (82.49%), Query Frame = 0
Query:   90 MDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 483
            +D+E ELDP EE+I+QEDAW VIS+YF+EKGLVRQQLDSFDEF+ +TM E+V+ +G+I++TPE QY+PG +  ++TFQI F QVYL+KP   EKDGS+T+MFPHEARLRNLTY++PLYCDI CK Y+AD      ++   +      +   EFLG+VPIMLR SFCVL +R+D+ELTELGECIYDQGGYF+ING +KVLIA ERMS NHVYCF+K+QPSKF W  E RS V+   RP S+M+LQMY KG +HS++ GG IR  LPY+RTDVP+VL+FRALG+ NDK ILEHIVYDFSD +MMEKFRPSLEEADVIQ++ +A DFIGKRGSA NVGRNERI YAKGLLQ+E LPHVG    +E KK FFLGY+VHKLLMCSLGRLEEDDRDHYGK
Sbjct:    3 VDNEYELDPHEEEITQEDAWQVISSYFAEKGLVRQQLDSFDEFINNTMQEIVTESGDIRVTPEPQYLPGMEVTKKTFQIKFNQVYLSKPIVIEKDGSVTNMFPHEARLRNLTYSAPLYCDIDCKIYDADNPAAPIDDKASILLAAYWKY--EFLGYVPIMLRCSFCVLADRSDRELTELGECIYDQGGYFIINGRQKVLIAQERMSNNHVYCFRKKQPSKFHWVCETRSHVEGGTRPTSTMYLQMYVKGPKHSQIAGGQIRTTLPYVRTDVPIVLIFRALGFVNDKTILEHIVYDFSDAEMMEKFRPSLEEADVIQSRTLALDFIGKRGSAANVGRNERIQYAKGLLQKEVLPHVGTDEASETKKGFFLGYVVHKLLMCSLGRLEEDDRDHYGK 394          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: A0A425D5T0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5T0_9STRA)

HSP 1 Score: 491 bits (1264), Expect = 8.960e-162
Identity = 244/383 (63.71%), Postives = 297/383 (77.55%), Query Frame = 0
Query:  103 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRT---FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYG 482
            +SQEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM EL+  + +I+ITPE QY PGQ T R T   +QI FGQ+YL+K T  E DGS + MFPHEARLRNLTY++PLY D++C+ Y+A  G    EE +  E   E    KEF+G +PIMLRS +CVL +++DKELTEL EC+YDQGGYFVINGSEKVLIA ERMS NHVYCFKK   SK++W  E RS V+   RP S+M++QMYAK    S V+G  IRA +PYIR D+PVV++FRALG+  D+ ILEHI YDF+D ++ME+F+PSLEEA VIQ Q VA DFIG+RGSAVNV + +R+ YA+ +LQ+E LPHVG+    E KK +FLGY+VHKLLMCSLGRL EDDRDHYG
Sbjct:   17 VSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKTNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKYQA--GTVPIEEQDPYE---EETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGVRPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYG 394          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 491 bits (1264), Expect = 3.920e-159
Identity = 242/395 (61.27%), Postives = 306/395 (77.47%), Query Frame = 0
Query:  103 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQD----------TVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTY----EADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 483
            ++QEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM ELV  +G I+++PE+Q++ G D          T ++ F++ FGQVYL+KPT  EKDG++T+MFPHEARLRNLTY +PLY D++   Y    + +VGD +++ GE +  EE R   KEFLG+VPIMLRS FCVL ++ D +L +LGECIYDQGGYFVINGSEKV++A ERMS NHVY FKK+QPSKF+W  E RS V+NS RP S++++QMY KG + + + G  IR+ LPYIRTD+PVV++FRALGY  D+ I+EH+VYD +D +MM+ FRPSLEEA VIQ Q VA DFIG+RGSA +V +++RI YA G+LQ+E LPHVG     E KK FFLGY VHKLLMC LGR +EDDRDH+GK
Sbjct:    8 VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVGYDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYRVGNDVNVGDPAEDMGEPVSTEEAR---KEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKGGKGA-IEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHCETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGK 398          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: A0A024TRP0_9STRA (DNA-directed RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA)

HSP 1 Score: 490 bits (1262), Expect = 5.420e-159
Identity = 243/383 (63.45%), Postives = 297/383 (77.55%), Query Frame = 0
Query:  103 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRT---FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYG 482
            +SQEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM EL+  + +I+ITPE QY PGQ + R T   +QI FGQ+YL+K T  E DGS + MFPHEARLRNLTY++PLY D++C+ ++A  G    EE E  E   E    KEF+G +PIMLRS +CVL +++DKELTEL EC+YDQGGYFVINGSEKVLIA ERMS NHVYCFKK   SK++W  E RS V+   RP S+M++QMYAK    S V+G  IRA +PYIR D+PVV++FRALG+  D+ ILEHI YDF+D ++ME+F+PSLEEA VIQ Q VA DFIG+RGSAVNV + +R+ YA+ +LQ+E LPHVG+    E KK +FLGY+VHKLLMCSLGRL EDDRDHYG
Sbjct:    9 VSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKSNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQA--GTVPIEEQEPYE---EETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYG 386          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: F0WJN8_9STRA (DNA-directed RNA polymerase subunit beta n=4 Tax=Oomycota TaxID=4762 RepID=F0WJN8_9STRA)

HSP 1 Score: 488 bits (1256), Expect = 1.360e-157
Identity = 239/386 (61.92%), Postives = 299/386 (77.46%), Query Frame = 0
Query:  103 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQ-----DTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADV-GDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYG 482
            +SQEDAW VIS+YF EKGLVRQQLDSFDEF+Q+TM ELV  +  I+I PE QY PGQ     DT+   + I FGQ+YL+KPT  E DGS + MFPHEARLRNLTY++PLY D+ C+ ++A+  G    EE   +E  ++ E PKEF+G VPIMLRS +CVL ++TDKELTEL EC+YDQGGYF+INGSEKVLIA ERMS NHVYCF+K   SK++W  E RS V++  RP S+M++QMY +    S ++G  IRA +PYIR D+PVV++FRALG+  D+ ILEHI YDF+D ++ME+F+PSLEEA VIQ Q VA DFIG+RGSA+NVG+ +RI YA+ +LQ+E LPHVG+    E KK +FLGY+VHKLLMCSLGR+ EDDRDHYG
Sbjct:   55 VSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRHIRINPEAQYTPGQAKAATDTI---YVIQFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANATGPTKIEE---MEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLINGSEKVLIAQERMSNNHVYCFRKSGVSKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKSAISGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYG 434          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: A0A1Z5JUL8_FISSO (DNA-directed RNA polymerase subunit beta n=3 Tax=Naviculales TaxID=38748 RepID=A0A1Z5JUL8_FISSO)

HSP 1 Score: 484 bits (1246), Expect = 2.660e-157
Identity = 250/428 (58.41%), Postives = 314/428 (73.36%), Query Frame = 0
Query:   78 YDPDAAYGAGGLMDDEDELDPLEED--------ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDT----------VRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTY----EADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 483
            YD DA      +  D+DE  P++E+        ++QED+W VISAYF EKGLVRQQLDSFDEF+Q+TM ELV  +G+I+++PE+Q+M G D            +  F+I+FGQVYL+KPT  EKDG +T MFPHEARLRNLTY +PLY D+    Y    E +V D S++ GE +  E  +   KEFLG+VPIMLR  FCVL ++ D EL+ELGECIYDQGGYFVINGSEKV+IA ER+S NHVY FKK+QPSKF+W  E RS V+NS RP SS+++QMY KG + + + G  IR+ LPYIRTDVPVV++FRALGY  D+ I+EH+VYD +D +MM+ FRPSLEEA VIQ Q VA DFIG+RGSA +V + +R+ YA+ +LQ+E LPHVG     E KK FF+GY VHKLLMC LGR +EDDRDH+GK
Sbjct:    3 YDDDALNNGPDMEMDDDEQ-PIDEEMMDVEDIPVTQEDSWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEVQHMVGYDDEAYDAEQQKDTKLVFEIHFGQVYLSKPTTVEKDGKVTYMFPHEARLRNLTYAAPLYVDVDLNQYHVPREVNVNDPSEDMGEPVSTEHAK---KEFLGYVPIMLRCLFCVLSDKDDAELSELGECIYDQGGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPVSSLYIQMYHKGGRGA-IEGNQIRSTLPYIRTDVPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLEEAFVIQRQDVALDFIGRRGSAKDVTKEDRMRYAQAILQKEVLPHVGTEEHCETKKGFFIGYAVHKLLMCKLGRADEDDRDHFGK 425          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: K3XBN8_GLOUD (DNA-directed RNA polymerase subunit beta n=28 Tax=Oomycota TaxID=4762 RepID=K3XBN8_GLOUD)

HSP 1 Score: 486 bits (1250), Expect = 4.910e-157
Identity = 234/382 (61.26%), Postives = 293/382 (76.70%), Query Frame = 0
Query:  103 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRT--FQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYG 482
            +SQEDAW VIS+YF EKGLVRQQLDSFDEF+Q+TM ELV  +  I+I PE QY PGQ+       + I+FGQ+YL+KPT  E DGS + MFPHEARLRNLTY +PLY D+ C+ Y+A     +  + + +   ++ E PKEF+G VPIMLRS +CVL ++TDKELTEL EC+YDQGGYF+INGSEKVLIA ERMS NHVYCF+K   SK++W  E RS V++  RP S+M++QMY +    S + G  IRA +PYIR D+PVV++FRALG+  D+ ILEHI YDFSD ++ME+F+PSLEEA VIQ Q VA DFIG+RGSA+NV + +RI YA+ +LQ+E LPHVG+    E KK +FLGY+VHKLLMCSLGR+ EDDRDHYG
Sbjct:   27 VSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQNKANTDTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYAAPLYVDVVCEKYQAPASGPA--DLDQIAPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKTGASKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKSAITGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKPSLEEAFVIQEQEVALDFIGRRGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYG 406          
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Match: K0RD88_THAOC (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RD88_THAOC)

HSP 1 Score: 488 bits (1255), Expect = 7.430e-157
Identity = 240/395 (60.76%), Postives = 306/395 (77.47%), Query Frame = 0
Query:  103 ISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQD----------TVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTY----EADVGDRSQEEGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK 483
            ++QEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM ELV  +G I+++PE+Q+  G D          + ++ F++ FGQVYL+KPT  EKDG++T+MFPHEARLRNLTY +PLY D++   Y    +A+V D ++E GE +  EE R   KEFLG+VPIMLRS FCVL ++ D +L +LGECIYDQGGYFV+NGSEKV++A ERMS NHVY F+K+QPSKF+W  E RS V+NS RP S++++QMY KG + + + G  IR+ LPYIRTD+PVV++FRALGY  D+ I+EH+VYD +D +MM+ FRPSLEE+ VIQ Q VA DFIG+RGSA +V +++RI YA G+LQRE LPHVG     E KK FFLGY VHKLLMC LGR++EDDRDH+GK
Sbjct:   50 VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHTVGYDEDGFDEAMSSSTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYRVPSDANVADPAEEMGEPVSTEEAR---KEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGYFVVNGSEKVIVAQERMSNNHVYAFRKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKGGKGA-IEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLEESFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQREVLPHVGTEEHCETKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGK 440          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9392.30887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ47_9PHAE0.000e+096.49DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FHZ3_ECTSI1.760e-30897.93DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA5.990e-18769.04DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A425D5T0_9STRA8.960e-16263.71DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
B8C598_THAPS3.920e-15961.27DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A024TRP0_9STRA5.420e-15963.45DNA-directed RNA polymerase subunit beta n=17 Tax=... [more]
F0WJN8_9STRA1.360e-15761.92DNA-directed RNA polymerase subunit beta n=4 Tax=O... [more]
A0A1Z5JUL8_FISSO2.660e-15758.41DNA-directed RNA polymerase subunit beta n=3 Tax=N... [more]
K3XBN8_GLOUD4.910e-15761.26DNA-directed RNA polymerase subunit beta n=28 Tax=... [more]
K0RD88_THAOC7.430e-15760.76DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1100.10coord: 113..301
e-value: 5.8E-9
score: 37.4
NoneNo IPR availablePANTHERPTHR20856:SF23coord: 92..482
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 102..482
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 296..483
e-value: 2.0E-41
score: 141.7
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 302..477
e-value: 9.7E-67
score: 226.1
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 120..295
e-value: 1.7E-49
score: 168.4
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 92..482

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9392contigEcto-sp8_S_contig9392:397..7163 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9392.30887.1mRNA_Ecto-sp8_S_contig9392.30887.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9392 397..7163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9392.30887.1 ID=prot_Ecto-sp8_S_contig9392.30887.1|Name=mRNA_Ecto-sp8_S_contig9392.30887.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=483bp
MSYEDEGDDVFGDAVPEGEAGVGEDDYGDAGGAAGGGGGYDNMDEEEEEE
DERGYEDGAAGGGGGEGLGLGEGEEEEYDPDAAYGAGGLMDDEDELDPLE
EDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKIT
PELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNL
TYNSPLYCDISCKTYEADVGDRSQEEGEGLEAEEERENPKEFLGWVPIML
RSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVY
CFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIR
AQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEE
ADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGT
EAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007642RNA_pol_Rpb2_2
IPR037034RNA_pol_Rpb2_2_sf
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2