prot_Ecto-sp8_S_contig9387.30878.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9387.30878.1
Unique Nameprot_Ecto-sp8_S_contig9387.30878.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length202
Homology
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.250e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0
Query:    1 MGEPLPPLPMPPPPRFAMLPAHLMEDVSDMIKF 33
            MGEPLPPLPMPPPPRFAMLPAHLMEDVSDMIKF
Sbjct:  424 MGEPLPPLPMPPPPRFAMLPAHLMEDVSDMIKF 456          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: A0A7R9TYN2_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TYN2_MICPS)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-8
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    8 LPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLP 92
            LP P PPRFA+LP H++ED +D   F  Y C   ++SG    ++ +      ++S  VL +G+  Y++NPY+RAK VE L  +LP
Sbjct:   10 LPTPCPPRFALLPEHILEDCAD---FLLYLCRFCAQSGGPNRDVFNHERLDELMSLFVLLLGSPEYVKNPYLRAKFVEVLRHWLP 91          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: C1N8L7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N8L7_MICPC)

HSP 1 Score: 64.3 bits (155), Expect = 1.530e-8
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    8 LPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLP 92
            LP P PPRFA+LP H++ED +D   F  Y C   ++SG    ++ +      ++S  VL +G+  Y++NPY+RAK VE L  +LP
Sbjct:  435 LPTPCPPRFALLPEHILEDCAD---FLLYLCRFCAQSGGPNRDVFNHERLDELMSLFVLLLGSPEYVKNPYLRAKFVEVLRHWLP 516          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: A0A7S3UH07_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UH07_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 5.890e-7
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 0
Query:    7 PLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPI--EASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLPEVKKMRGYPTPSSM 106
            PLP P P  FA LP H ++D++ ++ +   T P          ++++ +  E + I+ FL++F+G+  Y++NPY RA MVE L A +P  +   G P P S+
Sbjct:  565 PLPSPCPMEFATLPEHFVDDITTVLLYIVRTSP----------DILNSVQNELAEIIDFLIVFVGSPHYIKNPYKRADMVEVLHACIPR-ESQHGMPPPKSV 655          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: UPI001CB98CC8 (probable ubiquitin conjugation factor E4 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB98CC8)

HSP 1 Score: 59.3 bits (142), Expect = 7.950e-7
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 0
Query:    7 PLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLPEVKKMRGYPTPSSMTSSL 110
            PLP P P  FA +P H +EDV +++ FA+    P +  G         ++    ++F+++F+ +  Y+RNPY+RAKMVE L  ++P     RG  T SS TSSL
Sbjct:  541 PLPQPCPMEFACMPEHFVEDVMELLIFASRI--PRALDG---------VKLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMP-----RGNDT-SSATSSL 627          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: A0A7I4B2S9_PHYPA (U-box domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4B2S9_PHYPA)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-6
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 0
Query:    7 PLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLP 92
            PLP+P P  FA +P H +ED  +++ FA     P +  G         +     +SF+V+F+G+  ++RNPY+RAKMVE L  ++P
Sbjct:  255 PLPVPCPMEFASMPEHFVEDAMELLLFACRI--PKALDG---------VNLDEFMSFIVMFMGSPHHIRNPYLRAKMVEVLNGWMP 329          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: A0A2K1JDW3_PHYPA (U-box domain-containing protein n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JDW3_PHYPA)

HSP 1 Score: 58.2 bits (139), Expect = 1.970e-6
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 0
Query:    7 PLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLP 92
            PLP+P P  FA +P H +ED  +++ FA     P +  G         +     +SF+V+F+G+  ++RNPY+RAKMVE L  ++P
Sbjct:  583 PLPVPCPMEFASMPEHFVEDAMELLLFACRI--PKALDG---------VNLDEFMSFIVMFMGSPHHIRNPYLRAKMVEVLNGWMP 657          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: A0A2U1PD60_ARTAN (U-box domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PD60_ARTAN)

HSP 1 Score: 57.4 bits (137), Expect = 3.590e-6
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    7 PLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLP 92
            PLP P P  FA +P H +EDV +++ FA+    P +  G         ++    ++F+++F+ +  Y+RNPY+RAKMVE L  ++P
Sbjct:  542 PLPQPCPMEFACMPEHFVEDVMELLIFASRI--PRALDG---------VKLDEFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIP 616          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: A0A061QXI9_9CHLO (Ubiquitin conjugation factor E4 B n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QXI9_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 3.600e-6
Identity = 30/93 (32.26%), Postives = 52/93 (55.91%), Query Frame = 0
Query:    7 PLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLPEVKKMRG 99
            PLP PPP  F  LP + +ED+ + + F +   P          +++        +SF+V+F+G+  Y++NPY+R+++ EAL+  LP+ K   G
Sbjct:  552 PLPSPPPMEFRTLPEYFVEDLVETLLFVSRVSP----------QILEIGRVEEFISFIVVFLGSHEYIKNPYLRSRLSEALMLLLPQDKMDSG 634          
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Match: A0A346PYD4_9BRYO (UFD2 n=1 Tax=Sanionia uncinata TaxID=140003 RepID=A0A346PYD4_9BRYO)

HSP 1 Score: 57.4 bits (137), Expect = 3.600e-6
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    7 PLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLELISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLP 92
            PLP P P  FA +P H +ED  +++ FA+    P +  G         +     +SF+V+F+G+  +++NPY+RAKMVE L A++P
Sbjct:  585 PLPAPCPMEFASMPEHFVEDAMELLLFASRI--PRALDG---------VNLDEFMSFIVMFMGSPLHIKNPYLRAKMVEVLSAWMP 659          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9387.30878.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG5_ECTSI7.250e-10100.00Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
A0A7R9TYN2_MICPS1.290e-841.18Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1N8L7_MICPC1.530e-841.18Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S3UH07_9CHLO5.890e-734.31Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
UPI001CB98CC87.950e-738.46probable ubiquitin conjugation factor E4 n=1 Tax=E... [more]
A0A7I4B2S9_PHYPA1.840e-637.21U-box domain-containing protein n=1 Tax=Physcomitr... [more]
A0A2K1JDW3_PHYPA1.970e-637.21U-box domain-containing protein n=6 Tax=Physcomitr... [more]
A0A2U1PD60_ARTAN3.590e-636.05U-box domain-containing protein n=1 Tax=Artemisia ... [more]
A0A061QXI9_9CHLO3.600e-632.26Ubiquitin conjugation factor E4 B n=1 Tax=Tetrasel... [more]
A0A346PYD4_9BRYO3.600e-637.21UFD2 n=1 Tax=Sanionia uncinata TaxID=140003 RepID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019474Ubiquitin conjugation factor E4, corePFAMPF10408Ufd2P_corecoord: 7..98
e-value: 3.6E-12
score: 45.7
NoneNo IPR availablePANTHERPTHR13931UBIQUITINATION FACTOR E4coord: 7..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..201
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 51..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9387contigEcto-sp8_S_contig9387:116..6550 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9387.30878.1mRNA_Ecto-sp8_S_contig9387.30878.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9387 59..6564 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9387.30878.1 ID=prot_Ecto-sp8_S_contig9387.30878.1|Name=mRNA_Ecto-sp8_S_contig9387.30878.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=202bp
MGEPLPPLPMPPPPRFAMLPAHLMEDVSDMIKFAAYTCPPDSRSGLTPLE
LISPIEASGILSFLVLFIGTSGYMRNPYIRAKMVEALVAFLPEVKKMRGY
PTPSSMTSSLSAASRPSSWSTFGASALTGKASSATRRTAQSLLGSLTCSS
TTASITWTRRSSSSLPSRPHRRERRTNPCRRRTGRRRGKRRNTRAEAPST
A*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019474Ub_conjug_fac_E4_core