prot_Ecto-sp8_S_contig9299.30743.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9299.30743.1
Unique Nameprot_Ecto-sp8_S_contig9299.30743.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length495
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9299.30743.1 vs. uniprot
Match: A0A6H5K5F7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F7_9PHAE)

HSP 1 Score: 480 bits (1235), Expect = 1.120e-155
Identity = 250/303 (82.51%), Postives = 259/303 (85.48%), Query Frame = 0 
Query:    1 GDDSASGGSAGRPGFVLRQWLSKKPPPVRFPPGGGVNSAYSVLATSGGGFQRRYATGVEGTNGNTATTKNALAGAAVFFGAARYVFGEETDGSDCDTDAGSAFGDDGSEVEDRGGAAAAAAGRGGSETAQGDDVAQWKIVLLSDAAAGDMWGIQTQDSGNEGGGMWAHRETDAGVRGEQQQGQGEEXXXXXXXXXXXXXXXXX----EREIMAGHKVMAPPPVAEPNQRGKHDRAILMELFDRCHGPTWVGSANWGSEEPLSAWYNVAVDRGGHVQRLTLPRNKLSAGEIPSGLGMLAFLRDL 299
            GDDSASGGSAGRPGFVLR+WLSKKPPPVRFPP GG NSAYS+LATSGGGFQR+Y TGVEGT+GN  TTK+ALAG AVFFG ARYV+GEETDGSDCDTDAGSAFGD GSEV DRGGAAAA AGRGGSETA GDDVAQWK VLLSDAAA DMWGIQ QDSGN+GGGMWAHRETDA V GEQQ GQ EE                     ER IM GHKVMAPPPVAEPN+RGKHDRAILMELFDRCHGP WVGSANWGSEEPLS+WYNVAVDRGGHVQRLTL RNKLS GEIPSGLGMLAFLRDL
Sbjct:  644 GDDSASGGSAGRPGFVLREWLSKKPPPVRFPPAGGANSAYSILATSGGGFQRQYTTGVEGTDGNAVTTKSALAGPAVFFGPARYVYGEETDGSDCDTDAGSAFGDGGSEVVDRGGAAAAVAGRGGSETAPGDDVAQWKHVLLSDAAAEDMWGIQIQDSGNKGGGMWAHRETDARVGGEQQHGQREEPGLEGGLEEGDVEEEIEAEEEERNIMTGHKVMAPPPVAEPNKRGKHDRAILMELFDRCHGPAWVGSANWGSEEPLSSWYNVAVDRGGHVQRLTLSRNKLS-GEIPSGLGMLAFLRDL 945
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9299.30743.1 vs. uniprot
Match: D7FQW7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.440e-16
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0 
Query:  228 HDRAILMELFDRCHGPTWVGSANWGSEEPLSAWYNVAVDRGGHVQRLTLPRNKLSAGEIPSGLGMLAFLRD 298
            HDRA+LM LF+   GP W G+ANWGS+ PL  WYNV+VDRG  V  L LPRN +S GEIP  LGML+FL++
Sbjct:  364 HDRAVLMILFEVWKGPAWNGNANWGSDAPLEWWYNVSVDRG-RVTELILPRNNIS-GEIPPELGMLSFLQE 432
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9299.30743.1 vs. uniprot
Match: A0A6L7US98_9BACT (BIG2 domain-containing protein n=2 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6L7US98_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 5.660e-8
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 0 
Query:  229 DRAILMELFDRCHGPTWVGSANWGSEEPLSAWYNVAVDRGGHVQRLTLPRNKLSAGEIPSGLGMLAFLRDLRLHRNS 305
            DRA LM LFD   G  W+   NW  + P+ +W+ V  +    V  L L  N L AG +PS LG LA L +LR+  N+
Sbjct:  137 DRATLMSLFDAAGGKDWIRKDNWAGDGPVGSWFGVEANADARVTALRLSANGL-AGRLPSSLGELALLTELRVDGNA 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9299.30743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5F7_9PHAE1.120e-15582.51Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FQW7_ECTSI3.440e-1661.97Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6L7US98_9BACT5.660e-841.56BIG2 domain-containing protein n=2 Tax=Gemmatimona... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 389..413
e-value: 9.3
score: 13.5
coord: 317..341
e-value: 6.3
score: 14.9
coord: 437..461
e-value: 59.0
score: 6.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 371..426
e-value: 1.8E-6
score: 27.6
coord: 296..354
e-value: 3.5E-8
score: 33.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 223..381
e-value: 1.7E-39
score: 137.2
coord: 382..493
e-value: 1.7E-31
score: 111.1
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 317..419
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 272..386
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 376..477
coord: 272..386
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 376..477
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 317..419
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 265..479

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9299contigEcto-sp8_S_contig9299:2340..7297 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9299.30743.1mRNA_Ecto-sp8_S_contig9299.30743.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9299 2340..7297 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9299.30743.1 ID=prot_Ecto-sp8_S_contig9299.30743.1|Name=mRNA_Ecto-sp8_S_contig9299.30743.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=495bp
GDDSASGGSAGRPGFVLRQWLSKKPPPVRFPPGGGVNSAYSVLATSGGGF
QRRYATGVEGTNGNTATTKNALAGAAVFFGAARYVFGEETDGSDCDTDAG
SAFGDDGSEVEDRGGAAAAAAGRGGSETAQGDDVAQWKIVLLSDAAAGDM
WGIQTQDSGNEGGGMWAHRETDAGVRGEQQQGQGEEQGLEEGDVEEETEE
EGEEREIMAGHKVMAPPPVAEPNQRGKHDRAILMELFDRCHGPTWVGSAN
WGSEEPLSAWYNVAVDRGGHVQRLTLPRNKLSAGEIPSGLGMLAFLRDLR
LHRNSLRGDIPPFIGGLSSLTYLDLHGNNLRGEIPKEIGNLPLLESLLLA
QNKLSGPIPAEMGNLSRIRFISLQKNQLIGKIPRQLGKLAALQSLDLSFN
ALEGSIPTEIGDLRALTELTVGGNRLTGAIPPELGNLSKLVLLELYDNQL
SGSIPAELGNLKLLEHLAVAGNDLQGHPSLEFRTVASPAATRNS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf