prot_Ecto-sp8_S_contig92600.30681.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig92600.30681.1
Unique Nameprot_Ecto-sp8_S_contig92600.30681.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length69
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92600.30681.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.610e-22
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 0 
Query:    1 MSDKISRGRWASRTDALDLVADLERGQTTVKWKSDTNHFLRSIMWASPEQIV 52
            MSDK+SRGRWAS+TDAL+LVADLERG  TVKW+SD NH LRSIMWASPEQI+
Sbjct:  798 MSDKVSRGRWASKTDALELVADLERGPATVKWESDANHVLRSIMWASPEQIM 849
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BLAST of mRNA_Ecto-sp8_S_contig92600.30681.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.230e-13
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 
Query:    1 MSDKISRGRWASRTDALDLVADLERGQTTVKWKSDTNHFLRSIMWASPEQIV 52
            MS K++   WAS  DAL+LVA+LERG  TVKW+ D  + LRSIMWASPEQI+
Sbjct:   25 MSRKVTGELWASSGDALELVAELERGNETVKWELDAENILRSIMWASPEQIL 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92600.30681.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE3.610e-2282.69SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI2.230e-1363.46Putative far-red impaired response protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92600contigEcto-sp8_S_contig92600:67..273 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92600.30681.1mRNA_Ecto-sp8_S_contig92600.30681.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig92600 55..530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig92600.30681.1 ID=prot_Ecto-sp8_S_contig92600.30681.1|Name=mRNA_Ecto-sp8_S_contig92600.30681.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
MSDKISRGRWASRTDALDLVADLERGQTTVKWKSDTNHFLRSIMWASPEQ
IVRQDIRWCCHPRQYVPY*
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