prot_Ecto-sp8_S_contig92520.30667.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig92520.30667.1
Unique Nameprot_Ecto-sp8_S_contig92520.30667.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length124
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92520.30667.1 vs. uniprot
Match: UPI001592B93B (hypothetical protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001592B93B)

HSP 1 Score: 126 bits (316), Expect = 1.650e-34
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 0 
Query:    1 AIEYKTPTATGLKLISLATKMAELQKVRETNLGVELSRLGESAWKILIELVIAKEKRNQISAKDISNRTLLPEAIADRYINILEDMGHVIRSQHHSSRHEDRVSLTHNGHSLMRKTLVQLDTI 123
            AI Y TPT    +L+S+A K+  LQ +RE NLG  L+ LGE+AWKIL++LVIA E+   +S  DIS R  LPE IA RY+NILE  GH++R +H + +  D + LT  GHS+MRKTL++LD I
Sbjct:   45 AINYVTPTIPVSELVSVARKIERLQHIREENLGDGLAGLGETAWKILVQLVIATEEGKSMSLLDISGRISLPETIAVRYVNILETNGHIVRLRHPTDQGADHLQLTDEGHSIMRKTLLELDKI 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92520.30667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001592B93B1.650e-3452.85hypothetical protein n=1 Tax=Parasphingorhabdus fl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 15..123
e-value: 1.0E-7
score: 33.8
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 32..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92520contigEcto-sp8_S_contig92520:202..573 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92520.30667.1mRNA_Ecto-sp8_S_contig92520.30667.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig92520 202..573 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig92520.30667.1 ID=prot_Ecto-sp8_S_contig92520.30667.1|Name=mRNA_Ecto-sp8_S_contig92520.30667.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=124bp
AIEYKTPTATGLKLISLATKMAELQKVRETNLGVELSRLGESAWKILIEL
VIAKEKRNQISAKDISNRTLLPEAIADRYINILEDMGHVIRSQHHSSRHE
DRVSLTHNGHSLMRKTLVQLDTI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf