prot_Ecto-sp8_S_contig9238.30632.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9238.30632.1
Unique Nameprot_Ecto-sp8_S_contig9238.30632.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length559
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9238.30632.1 vs. uniprot
Match: A0A6H5JAX5_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX5_9PHAE)

HSP 1 Score: 534 bits (1375), Expect = 1.420e-178
Identity = 423/598 (70.74%), Postives = 429/598 (71.74%), Query Frame = 0 
Query:    1 MPSTTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAASPGLTPAAAPLAGGRMAGLSRAREAAAAARDVGAMTDGPGNNGSVLEQQVVPAATTR--RVRQRPRSDDQAAPSTAAAREARGSPVEQRFYGSPEEVEASANKEGVSVRALRRSRALVRRTKRIPKTESSWEAALRELDRAEREEARHRXXXXXXXXXXXDAGQDGEPLDLMRAGS---------------------------RWREALGLLYHIRALGITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYAC--------------------------------------------------CDSKTGENWEAAAALLRRSETLRNNFYYGRVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVISVACLSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVITVCATCGEVDRAVGLFD 519
            M S TGM FVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAA P LTPAAAPLAGGRMAGLSRAREAAAAARDVGAMTDGPGNNGS+LE            RVRQRPRSDDQAAPSTAAAR ARGSP EQ  YGS EEVEASA KEGVS RALRRSRALVRR KRIPKTESSWEAALRELD+AEREEARHRXXXXXXXXXXXDAGQDGEPLDL+ + S                           RWREALGLLYHIRALGITPNVKSVSATLNACGQAGQ                                                                                                    CDSKTGENWEAAAALLRRS+TLRNNF+YGRVIMACRRAGQWQKALEVLREM RVGLTPDIFCYDTVISVACLSSVGA XXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             SVITVCATCGEVDRAVGLFD
Sbjct:    1 MRSPTGMWFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAAIPELTPAAAPLAGGRMAGLSRAREAAAAARDVGAMTDGPGNNGSLLEXXXXXXXXXXXXRVRQRPRSDDQAAPSTAAAR-ARGSPAEQLLYGSTEEVEASAKKEGVSARALRRSRALVRRIKRIPKTESSWEAALRELDQAEREEARHRXXXXXXXXXXXDAGQDGEPLDLINSSSSSTGKVVRVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSATLNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSDTLRNNFFYGRVIMACRRAGQWQKALEVLREMPRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSGVEPNTYSYGSVITVCATCGEVDRAVGLFD 597
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BLAST of mRNA_Ecto-sp8_S_contig9238.30632.1 vs. uniprot
Match: D7G0N2_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N2_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.070e-58
Identity = 202/330 (61.21%), Postives = 205/330 (62.12%), Query Frame = 0 
Query:  240 RWREALGLLYHIRALGITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYAC--------------------------------------------------CDSKTGENWEAAAALLRRSETLRNNFYYGRVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVISVACLSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVITVCATCGEVDRAVGLFD 519
            RWREALGLLYHIRALGITPNVKSVSA LNACGQAGQ                                                                                                    CDSKTGENWEAAAALLRRSETLRNNF+YGRVIMACRRAGQWQKALEVLREMSRVGL PDIFCYDTVISVAC+SSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXX SACKKAGRPRQAVSL       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               SVITVCATCGEVD+AVGLFD
Sbjct:   18 RWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFD 347
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BLAST of mRNA_Ecto-sp8_S_contig9238.30632.1 vs. uniprot
Match: A0A812RT14_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812RT14_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.020e-5
Identity = 41/157 (26.11%), Postives = 64/157 (40.76%), Query Frame = 0 
Query:  241 WREALGLLYHIRALGITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYACCDSKTGENWEAAAAL----LRRSETLRNNFYYGRVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVIS 393
            W+ ALG    +    + PNV + S+ L AC +  QW   +ELLG+ R WG EL+  +                       ++   C +     WE A  L    L  +   RN   Y  ++ +C    +W ++L +LR +      PD     +VIS
Sbjct:   90 WQTALGFTSQLSEQEVLPNVVTSSSALCACREGHQWLLAVELLGDLRLWGIELDVVAHG---------------------SVVGACKAA----WEQAFFLHHEPLGDARLTRNIISYSALLQSCSECSEWSQSLHILRSLKTTASRPDTVALTSVIS 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9238.30632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAX5_9PHAE1.420e-17870.74PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7G0N2_ECTSI1.070e-5861.21PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A812RT14_9DINO1.020e-526.11Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 194..221
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 416..557
coord: 294..396
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 172..295
e-value: 7.4E-9
score: 37.4
coord: 398..559
e-value: 6.1E-42
score: 146.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 296..397
e-value: 9.7E-16
score: 59.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 267..290
e-value: 0.37
score: 11.1
coord: 353..380
e-value: 7.7E-4
score: 19.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 493..540
e-value: 1.8E-9
score: 37.7
coord: 424..468
e-value: 1.5E-9
score: 37.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 424..457
e-value: 6.6E-8
score: 30.3
coord: 355..385
e-value: 1.7E-5
score: 22.6
coord: 459..486
e-value: 5.8E-5
score: 21.0
coord: 496..530
e-value: 1.2E-5
score: 23.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 529..559
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 10.939
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 384..421
score: 6.215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 422..456
score: 12.101
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 8.024
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 457..491
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 349..383
score: 10.885

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9238contigEcto-sp8_S_contig9238:1760..7324 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9238.30632.1mRNA_Ecto-sp8_S_contig9238.30632.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9238 1760..7324 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9238.30632.1 ID=prot_Ecto-sp8_S_contig9238.30632.1|Name=mRNA_Ecto-sp8_S_contig9238.30632.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=559bp
MPSTTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSN
DEAVREAATTGDDAASPGLTPAAAPLAGGRMAGLSRAREAAAAARDVGAM
TDGPGNNGSVLEQQVVPAATTRRVRQRPRSDDQAAPSTAAAREARGSPVE
QRFYGSPEEVEASANKEGVSVRALRRSRALVRRTKRIPKTESSWEAALRE
LDRAEREEARHRRREQDQQNNNDDAGQDGEPLDLMRAGSRWREALGLLYH
IRALGITPNVKSVSATLNACGQAGQWQRCLELLGEAREWGTELNEASTAL
RLLREMEERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLRNN
FYYGRVIMACRRAGQWQKALEVLREMSRVGLTPDIFCYDTVISVACLSSV
GAQWKIARGLLRQQAKTGVPCSLISYNLVLSACKKAGRPRQAVSLLRAMR
RHGCSPDLISYNTAISACVKRREWELAMFVLRDMQRPDSGLEPNTYSYGS
VITVCATCGEVDRAVGLFDEMPEAGVKVDAFTYNSVAMAYARDGRWRQAI
ATLSDMSEL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat