prot_Ecto-sp8_S_contig92197.30606.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig92197.30606.1
Unique Nameprot_Ecto-sp8_S_contig92197.30606.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length52
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92197.30606.1 vs. uniprot
Match: D7FLE3_ECTSI (ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE3_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.370e-21
Identity = 46/52 (88.46%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:    1 MKVTEISKVLGARWREMDDNDKAPFQKKADKXXXXXXKEMAAYNAKKAAEPA 52
            MKVTEISKVLGARWREMDDNDKAPFQKKADK      KEMAAYNAKKAAEPA
Sbjct:   18 MKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPA 69
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BLAST of mRNA_Ecto-sp8_S_contig92197.30606.1 vs. uniprot
Match: A0A6H5JHH0_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.160e-20
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:    1 MKVTEISKVLGARWREMDDNDKAPFQKKADKXXXXXXKEMAAYNAKKAAEPA 52
            MKVTEISK+LGARWREMDDNDKAPFQKKADK      KEMAAYNAKKAAEPA
Sbjct:   58 MKVTEISKLLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAEPA 109
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BLAST of mRNA_Ecto-sp8_S_contig92197.30606.1 vs. uniprot
Match: A0A7S2FX93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FX93_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.270e-5
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:    1 MKVTEISKVLGARWREMDDNDKAPFQKKADKXXXXXXKEMAAYNAKKAAE 50
            + VTE+SKV+GA+W+E+   +K+ F++KA        +E+AAY  KKAAE
Sbjct:   90 LSVTELSKVIGAKWKELTPEEKSKFEEKAKADKERYAEEVAAYKGKKAAE 139
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BLAST of mRNA_Ecto-sp8_S_contig92197.30606.1 vs. uniprot
Match: A0A7M5XJP6_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XJP6_9CNID)

HSP 1 Score: 47.8 bits (112), Expect = 3.960e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:    2 KVTEISKVLGARWREMDDNDKAPFQKKADKXXXXXXKEMAAYNAK 46
            K+TEI+  LGA+WR M+D DKAP+ + A K      KEMA YN +
Sbjct:  128 KITEIASALGAKWRGMNDKDKAPYAELAVKDKERYQKEMAEYNGR 172
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BLAST of mRNA_Ecto-sp8_S_contig92197.30606.1 vs. uniprot
Match: A0A7S2CA52_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CA52_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.940e-5
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:    1 MKVTEISKVLGARWREMDDNDKAPFQKKADKXXXXXXKEMAAYNAKKAAE 50
            + VTE+SKV+GA+W+E+   +K+ F++KA        +E+AAY  KKAAE
Sbjct:  159 LSVTELSKVIGAKWKELTPEEKSKFEEKAKADKERYAEEVAAYKGKKAAE 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92197.30606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FLE3_ECTSI1.370e-2188.46ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) t... [more]
A0A6H5JHH0_9PHAE1.160e-2086.54HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2FX93_9STRA3.270e-546.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7M5XJP6_9CNID3.960e-551.11Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A7S2CA52_9STRA5.940e-546.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..46
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 9..28
score: 36.11
coord: 28..48
score: 48.5
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 1..47
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 1..47
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 1..45
e-value: 1.2E-4
score: 31.4
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 1..44
e-value: 2.4E-14
score: 53.5
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 1..44
score: 14.449
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 1..52
e-value: 4.4E-16
score: 60.9
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 1..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92197contigEcto-sp8_S_contig92197:464..619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92197.30606.1mRNA_Ecto-sp8_S_contig92197.30606.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig92197 443..619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig92197.30606.1 ID=prot_Ecto-sp8_S_contig92197.30606.1|Name=mRNA_Ecto-sp8_S_contig92197.30606.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
MKVTEISKVLGARWREMDDNDKAPFQKKADKDKARYQKEMAAYNAKKAAE
PA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf