prot_Ecto-sp8_S_contig9178.30526.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9178.30526.1
Unique Nameprot_Ecto-sp8_S_contig9178.30526.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length335
Homology
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 525 bits (1352), Expect = 3.620e-186
Identity = 289/334 (86.53%), Postives = 297/334 (88.92%), Query Frame = 0
Query:    1 MDGVFEEEGDGGHAEEEDVLGGRGGGVGAGATVLDSVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACRSRLLFIHDAAARLSNDAERERLDQVRRXXXXXXXXXXXXDENLMFFNTF 334
            MDGVFEEEG+GGHAEEE VLGG    +GAGATVLDSVLWKLGFDK     FHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLD+S+PTERKVDE VSASISARDLFDKLCEAWQT+NLTKNK+VPDWRRF+SW SALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIR NLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRL+RDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKA     LFIHDA                  XXXXXXXXXXXX ENLMFFNTF
Sbjct:    1 MDGVFEEEGEGGHAEEEGVLGGXXXXIGAGATVLDSVLWKLGFDK-----FHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKA-----LFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNTF 324          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 148 bits (373), Expect = 2.160e-36
Identity = 85/265 (32.08%), Postives = 151/265 (56.98%), Query Frame = 0
Query:   28 GAGATVLD-SVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDK 282
            G+GAT  + S++W+ G  +       RD R+ A +    +    + +A ++V+ ML  S+P ER+ DEP S  +SARDLF    E         +++   WR  +++   +C D + MV K+   +  +P         +YVV+M K+V++++    +   +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RRKF    +K
Sbjct:  310 GSGATTDERSLVWRFGVTQ-----LLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSARDLF----EMESVKKALPSEANNPWRLLLNYIMVMCRDKSGMVMKV-SQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENK 562          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 148 bits (373), Expect = 3.450e-36
Identity = 91/281 (32.38%), Postives = 151/281 (53.74%), Query Frame = 0
Query:   11 GGHAEEEDVLGGRGGGVGAGATVLDSVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDK 282
            GG    ED   G G       T   S++W+ G  +       RD R+ A +    +    + +A ++V  ML  SAP ER+ DEP SA +SARDLF+         N    ++   WR  +++   +C D + MV K+   +  +P         +YVV+M K+V++++        +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   V E +  ++  +R RRKF    +K
Sbjct:  361 GGETSGEDAPDGSGA-----HTDERSLVWRFGVTQ-----LLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSARDLFNME----SVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENK 624          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 147 bits (370), Expect = 7.380e-36
Identity = 90/311 (28.94%), Postives = 161/311 (51.77%), Query Frame = 0
Query:   32 TVLDSVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIP--------GSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACRSRLLFIHDAAARLSNDAERERLDQVRRXXXXXXXXXXXXDENLMFFNTF 334
            T   S++W+ G  +       RD R+   +    +    + +A ++V+ ML  S+P ER+ DE  SA +SARDLF+             ++S   WR  +++ + +C D + M+ K+            +   +YVV+M K+V++++   V    +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RRKF    +K   +R       + +L    + ++ D++ R            D  LM F  F
Sbjct:  349 TDETSLVWRFGMTQ-----MLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNME----SVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKVAQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIAR-------SEQLVEALDIDKFDKLSRSLDRLDRAIIHLDGMLMLFRDF 641          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.090e-35
Identity = 94/317 (29.65%), Postives = 164/317 (51.74%), Query Frame = 0
Query:   28 GAGATVLD--SVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACRSRLLFIHDAAARLSNDAERERLDQVRRXXXXXXXXXXXXDENLMFFNTF 334
            G+ A  +D  S++W+ G  +       RD R+ A +    +    + +A ++V  ML  SAP ER+ DEP+SA +SARDLF          N   ++S   WR  +++   +C D + MV K+     D    R      YVV+M K+V++++        +D++G  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  +++V +QE+PKRAD NP  TF+ W++    +   + E +  ++  +R RRKF    +K   +R       + +L    + ++ D++ R            D  LM +  F
Sbjct:  353 GSSAVDMDERSLVWRFGVTQ-----LLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSARDLFGME----SVKNALPSESNNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIAR-------SEQLVEGNDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 651          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 144 bits (362), Expect = 6.800e-35
Identity = 90/286 (31.47%), Postives = 152/286 (53.15%), Query Frame = 0
Query:   11 GGHAEEEDVLGGRGGGVGAGATVLDSVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPD-----WRRFISWTSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDK 282
            GG    ED   G G       T   S++W+ G  +       RD R+ A +    +    + +A ++V  ML  S+P ER+ DEP S  +SARDLFD           +  K++P      WR  +++   +C D + MV K+   +  +P         +YVV+M K+V++++        +D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RRKF    +K
Sbjct:  292 GGETSGEDAPDGSGA-----HTDERSLVWRFGVTQ-----LLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARDLFDME---------SVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENK 555          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.420e-33
Identity = 90/279 (32.26%), Postives = 150/279 (53.76%), Query Frame = 0
Query:   12 GHAEEEDVLGGRGGGVGAGATVLDSVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDK 282
            G +++ D   G   G   GA    +++W+ G D+       RD R+ A +    +    + +A ++V  ML  S+P ER+ DE  S  ++AR+LF         S L K+ S   WR  +++ + +C D + MV K+     D    R      YVV+M K+V ++R        +D++G  +ARI+ +L++ + L+QQ +GE+A++P +DAR RLY L  +R+V +QEVPKRAD NP  T Y W++   ++ + V E +  ++  +R RRK     +K
Sbjct:  353 GESDDADAPAGMAAG---GALAEQALVWRFGADQ-----LMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTARELFAVPAVK---SALPKD-SKDTWRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVRLLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNK 617          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 9.690e-33
Identity = 86/265 (32.45%), Postives = 150/265 (56.60%), Query Frame = 0
Query:   36 SVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKA--CRSRLL 289
            S++W+      G +   RD R+ A +    +    + +A ++V  ML  S+P ER+ DEP S  +SAR+LF    E+ +++ L    + P WR  +++   +C D + MV K+   +T +P         +YVV+M K+V+++R        +D++G  +ARI+ +L++ + L+Q+ +GE+A++P +D R RLY L  +++V +QEVPKRAD NP  TF+ W++   ++   V E +  ++  +R RRK     +K    RS LL
Sbjct:  364 SLVWRF-----GAAQLLRDLRHKACIKFASENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARELF--AMESVKSA-LPPESNNP-WRLLLNYIMVMCRDKSGMVMKV-SQETFDPNQTRAGDGGQYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVRLLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVAERIQDSVCRLRRRRKAEADENKELIARSELL 616          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC)

HSP 1 Score: 135 bits (340), Expect = 9.460e-32
Identity = 90/315 (28.57%), Postives = 162/315 (51.43%), Query Frame = 0
Query:   36 SVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPD-----WRRFISWTSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACRSR---LLFIHDAAARLSNDAERERLDQVRRXXXXXXXXXXXXDENLMFFNTF 334
            S++W+ G  +       R+ R+ A +    +    + +A ++V  ML+ S+P ER+ +E  SA +SARDL++           T  K++P      WR  +++ + +C D + M+ K+     D+   R      YVV+M K+V++++        +DR+G  +ARI+ +L++ + L+Q+ +GE+A++P ++AR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RR F    +K   +R   L+  HD           ++ D++ R            D  LM F  F
Sbjct:  358 SLVWRFGMTQ-----MLRELRHKACIRFATENV--NAVAGVIVTAMLEHSSPRERESNESTSAPVSARDLYNME---------TVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKELIARSEQLVEAHDL----------DKFDKLSRSLDRLDRAIIQLDGMLMLFRDF 646          
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Match: A0A024GFJ4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 8.400e-31
Identity = 85/314 (27.07%), Postives = 170/314 (54.14%), Query Frame = 0
Query:   32 TVLD--SVLWKLGFDKGGGSAFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKSVPD-WRRFISWTSALCTDLTSMVSKIPG-----SDTQNP---RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACRSRLLFIHDAAARLSNDAERERLDQVRRXXXXXXXXXXXXDENLMFFNTF 334
            T +D  S++W+ G D+       R+ R+ A +    +    + +A ++V  ML  S   ER+ +EP S  ++AR+++ K+ E  Q       K + D WR  +++ + +  D + M++++       + TQ     +YVV+M  +  Y++   +    +D++G ++ARI+ ++L+ + L+Q+ +GE+A++P ++AR RLY L RD+++ +QE+PKR+D NP  T Y W++    + +V+ E +  ++  +R RR F+   +K   +R       +++L  + + E+ D++ +            DENLM +  F
Sbjct:  353 TEMDEKSLVWRCGTDQ-----LLRELRHDAFVRFAMENV--NHVAGVIVSAMLSYSMSHERESNEPTSFPMTAREIY-KVDEVKQALP----KEIKDTWRLLLNYLAVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKFGVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIAR-------SSQLVEENDLEKFDKLSQGLDRLDRSILQLDENLMLYRDF 647          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9178.30526.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS6_ECTSI3.620e-18686.53DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
H3GD40_PHYRM2.160e-3632.08DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A0W8C9C8_PHYNI3.450e-3632.38DNA-directed RNA polymerase III subunit RPC3 n=12 ... [more]
A0A0P1AWK6_PLAHL7.380e-3628.94DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A3R7FY14_9STRA1.090e-3529.65DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
G4Z0C0_PHYSP6.800e-3531.47DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A5D6XL36_9STRA2.420e-3332.26DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A662YGR9_9STRA9.690e-3332.45DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A484E8N6_BRELC9.460e-3228.57DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A024GFJ4_9STRA8.400e-3127.07DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 300..327
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 162..251
e-value: 3.4E-28
score: 99.3
IPR024550TFIIEalpha/SarR/Rpc3 HTH domainPFAMPF02002TFIIE_alphacoord: 172..265
e-value: 1.2E-7
score: 31.5
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 35..333
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 169..255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9178contigEcto-sp8_S_contig9178:1348..6995 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9178.30526.1mRNA_Ecto-sp8_S_contig9178.30526.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9178 1348..6995 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9178.30526.1 ID=prot_Ecto-sp8_S_contig9178.30526.1|Name=mRNA_Ecto-sp8_S_contig9178.30526.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=335bp
MDGVFEEEGDGGHAEEEDVLGGRGGGVGAGATVLDSVLWKLGFDKGGGSA
FHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASI
SARDLFDKLCEAWQTSNLTKNKSVPDWRRFISWTSALCTDLTSMVSKIPG
SDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEILLQNKYLD
QQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTI
KHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACRSRLLFIHDAAARLSN
DAERERLDQVRRSLDRLDAALLRLDENLMFFNTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR024550TFIIEa/SarR/Rpc3_HTH_dom
IPR039748RPC3
IPR036390WH_DNA-bd_sf