prot_Ecto-sp8_S_contig91439.30469.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig91439.30469.1
Unique Nameprot_Ecto-sp8_S_contig91439.30469.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length47
Homology
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BLAST of mRNA_Ecto-sp8_S_contig91439.30469.1 vs. uniprot
Match: UPI000C780D3A (selenoprotein M-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C780D3A)

HSP 1 Score: 63.2 bits (152), Expect = 1.540e-11
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:    1 MRGWVLGLLLVGALAFVRGEDEAEGEDGIEFEDETIFRCVIESCSG 46
            MR   +GLL++  +A VR EDEAEGEDG+EFED TIF+CV+ESCSG
Sbjct:    1 MRLMYVGLLVL-FVASVRTEDEAEGEDGVEFEDNTIFKCVVESCSG 45
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BLAST of mRNA_Ecto-sp8_S_contig91439.30469.1 vs. uniprot
Match: A0A0U2UF34_ACAPC (Putative selenoprotein M-like protein n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2UF34_ACAPC)

HSP 1 Score: 54.3 bits (129), Expect = 4.660e-8
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0 
Query:    7 GLLLVGALAFVRGEDEAEGEDGIEFEDETIFRCVIESCSG 46
            GL+ +  LA VR EDEAEGEDG+ FED  +++ V+ESC+G
Sbjct:    8 GLIALLVLASVRAEDEAEGEDGVTFEDTAVYKAVVESCAG 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig91439.30469.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000C780D3A1.540e-1167.39selenoprotein M-like n=1 Tax=Eurytemora affinis Ta... [more]
A0A0U2UF34_ACAPC4.660e-857.50Putative selenoprotein M-like protein n=1 Tax=Acar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.873

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig91439contigEcto-sp8_S_contig91439:393..533 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig91439.30469.1mRNA_Ecto-sp8_S_contig91439.30469.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig91439 156..533 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig91439.30469.1 ID=prot_Ecto-sp8_S_contig91439.30469.1|Name=mRNA_Ecto-sp8_S_contig91439.30469.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=47bp
MRGWVLGLLLVGALAFVRGEDEAEGEDGIEFEDETIFRCVIESCSG*
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