prot_Ecto-sp8_S_contig9133.30453.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9133.30453.1
Unique Nameprot_Ecto-sp8_S_contig9133.30453.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length133
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9133.30453.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 2.720e-64
Identity = 115/133 (86.47%), Postives = 117/133 (87.97%), Query Frame = 0 
Query:    2 FVGRRSGLPPILAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCRRRVPGCSLELSAGRQTKIEVIGTTNTPGLGTGGXXXXVLARPPGGEGEDDLGAERMSLFTPRFVPRRYTPLSSLVPPPLRGSRR-IGN 133
            FVGRRSGLPPI AVVKVWAPNEATAGLLLEGAVLRLHSVTASVCR RVPGCSLELSAGRQTKIEVIGTT TPG GTGG    V ARP GGEG D LGAER   F+PRFVPRRYTPLS+LVPPPLRGSRR IGN
Sbjct: 3292 FVGRRSGLPPISAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCRHRVPGCSLELSAGRQTKIEVIGTTTTPGFGTGGDGGGVPARPTGGEGGDYLGAERTPFFSPRFVPRRYTPLSALVPPPLRGSRRRIGN 3424
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BLAST of mRNA_Ecto-sp8_S_contig9133.30453.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.180e-60
Identity = 110/131 (83.97%), Postives = 113/131 (86.26%), Query Frame = 0 
Query:    2 FVGRRSGLPPILAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCRRRVPGCSLELSAGRQTKIEVIGTTNTPGLGTGGXXXXVLARPPGGEGEDDLGAERMSLFTPRFVPRRYTPLSSLVPPPLRGSRRIG 132
            FVGRRSGLPPILAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCR RVPGCSLELSAGRQTKIEVIGTT T G G       VLARPP GEG  DLG ER   FTPRF+PRRYTPLS+LVPPPLRGSRR+G
Sbjct: 3557 FVGRRSGLPPILAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCRHRVPGCSLELSAGRQTKIEVIGTTATGGGG------GVLARPPAGEGGHDLGGERTPFFTPRFLPRRYTPLSALVPPPLRGSRRMG 3681
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9133.30453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN1_ECTSI2.720e-6486.47Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JH10_9PHAE1.180e-6083.97BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 7..72
e-value: 5.7E-7
score: 31.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9133contigEcto-sp8_S_contig9133:5718..6906 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9133.30453.1mRNA_Ecto-sp8_S_contig9133.30453.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9133 5718..6906 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9133.30453.1 ID=prot_Ecto-sp8_S_contig9133.30453.1|Name=mRNA_Ecto-sp8_S_contig9133.30453.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=133bp
GFVGRRSGLPPILAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCRRRVP
GCSLELSAGRQTKIEVIGTTNTPGLGTGGGGGGVLARPPGGEGEDDLGAE
RMSLFTPRFVPRRYTPLSSLVPPPLRGSRRIGN
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