mRNA_Ecto-sp8_S_contig99810.31866.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99810.31866.1
Unique NamemRNA_Ecto-sp8_S_contig99810.31866.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A6H5K1H6_9PHAE (Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1H6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 8.150e-32
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            +ADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK
Sbjct:  254 RADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 317
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A397EWQ0_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EWQ0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.190e-29
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRKV 195
            Q D GEAS LHI+IFDEIDAICK RG+ RDGTGV DSVVNQLL++IDGVDSLNNVL+IGMTNRKV
Sbjct:   38 QNDLGEASELHIIIFDEIDAICKARGSSRDGTGVGDSVVNQLLTQIDGVDSLNNVLVIGMTNRKV 102
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A7S2SFV3_9STRA (Vesicle-fusing ATPase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SFV3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.190e-27
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            Q + G+ASMLHI+I DE+DAICK+RGTVRDGTGVSDSVVNQLLSKIDGVDSLNN+L+IGMTNRK
Sbjct:  314 QNEAGDASMLHIIILDEMDAICKSRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNILLIGMTNRK 377
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A6V1TI52_HETAK (Vesicle-fusing ATPase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TI52_HETAK)

HSP 1 Score: 112 bits (280), Expect = 2.190e-27
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            QA +G+ SMLHI+IFDEIDAICK+RG++RDGTGV DS+VNQLLSKIDGVDSLNN+L+IGMTNRK
Sbjct:  317 QAQEGDDSMLHIIIFDEIDAICKSRGSIRDGTGVHDSIVNQLLSKIDGVDSLNNILVIGMTNRK 380
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A835YZT3_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.060e-27
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            Q  +GE SMLHI+IFDEIDAICKTRG+ RD TGVSDS+VNQLLSKIDGVDSLNNVLIIGMTNRK
Sbjct:  300 QRSEGENSMLHIIIFDEIDAICKTRGSSRDSTGVSDSIVNQLLSKIDGVDSLNNVLIIGMTNRK 363
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A2G3C845_CAPCH (Vesicle-fusing ATPase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3C845_CAPCH)

HSP 1 Score: 102 bits (255), Expect = 6.130e-27
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:   13 GEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            G+ S LH++IFDEIDAICK+RGT RDGTGV DS+VNQLL+KIDGV+SLNNVL+IGMTNRK
Sbjct:   45 GDQSDLHVIIFDEIDAICKSRGTTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 104
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A2N9GRQ0_FAGSY (Vesicle-fusing ATPase n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRQ0_FAGSY)

HSP 1 Score: 103 bits (256), Expect = 7.180e-27
Identity = 48/64 (75.00%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            Q ++G+ S LH++IFDEIDAICK+RG+ RDGTGV DS+VNQLL+KIDGV+SLNNVL+IGMTNRK
Sbjct:   31 QRNRGDDSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 94
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A7S4HXN0_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HXN0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.550e-27
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            Q + G+ SMLHI+I DE+DAICK+RGTVRDGTGVSDSVVNQLLSKIDGVDSLNN+L+IGMTNRK
Sbjct:  350 QNEAGDHSMLHIIILDEMDAICKSRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNILLIGMTNRK 413
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BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A7R9VM01_9STRA (Vesicle-fusing ATPase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM01_9STRA)

HSP 1 Score: 110 bits (274), Expect = 9.750e-27
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            Q + G+ SMLHI+I DE+DAICK+RGTVRDGTGVSDSVVNQLLSKIDGVDSLNN+L+IGMTNRK
Sbjct:   96 QNEAGDHSMLHIIILDEMDAICKSRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNILLIGMTNRK 159
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Match: A0A7S2EPU7_9STRA (Vesicle-fusing ATPase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EPU7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.040e-26
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 QADQGEASMLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLIIGMTNRK 192
            Q + G+ SMLHI+I DE+DAICK+RGTVRDGTGVSDSVVNQLLSKIDGVDSLNN+L+IGMTNRK
Sbjct:  328 QLEAGDHSMLHIIILDEMDAICKSRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNILLIGMTNRK 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99810.31866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1H6_9PHAE8.150e-3298.44Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A397EWQ0_9STRA1.190e-2983.08Vesicle-fusing ATPase (Fragment) n=1 Tax=Aphanomyc... [more]
A0A7S2SFV3_9STRA2.190e-2784.38Vesicle-fusing ATPase n=1 Tax=Eucampia antarctica ... [more]
A0A6V1TI52_HETAK2.190e-2781.25Vesicle-fusing ATPase n=1 Tax=Heterosigma akashiwo... [more]
A0A835YZT3_9STRA4.060e-2785.94Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxI... [more]
A0A2G3C845_CAPCH6.130e-2780.00Vesicle-fusing ATPase n=1 Tax=Capsicum chinense Ta... [more]
A0A2N9GRQ0_FAGSY7.180e-2775.00Vesicle-fusing ATPase n=1 Tax=Fagus sylvatica TaxI... [more]
A0A7S4HXN0_9STRA8.550e-2782.81Vesicle-fusing ATPase (Fragment) n=1 Tax=Odontella... [more]
A0A7R9VM01_9STRA9.750e-2782.81Vesicle-fusing ATPase n=1 Tax=Pseudictyota dubia T... [more]
A0A7S2EPU7_9STRA1.040e-2682.81Vesicle-fusing ATPase (Fragment) n=2 Tax=Ditylum b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99810contigEcto-sp8_S_contig99810:289..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score112.8
Seed ortholog evalue5.1e-23
Seed eggNOG ortholog2880.D8LTY3
Preferred nameNSF
Model size195
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0008104,GO:0008150,GO:0009306,GO:0009506,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030054,GO:0032940,GO:0033036,GO:0040011,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055044,GO:0071702,GO:0071705,GO:0071944,GO:0098657
Exons1
EggNOG free text desc.SNARE complex disassembly
EggNOG OGsCOG0464@1,KOG0741@2759
EC3.6.4.6
Cds size171
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145368.2733781-CDS-Ecto-sp8_S_contig99810:288..4591681145368.2733781-CDS-Ecto-sp8_S_contig99810:288..459Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99810 289..459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145368.2891986-UTR-Ecto-sp8_S_contig99810:459..4831681145368.2891986-UTR-Ecto-sp8_S_contig99810:459..483Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99810 460..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99810.31866.1prot_Ecto-sp8_S_contig99810.31866.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99810 289..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99810.31866.1

>prot_Ecto-sp8_S_contig99810.31866.1 ID=prot_Ecto-sp8_S_contig99810.31866.1|Name=mRNA_Ecto-sp8_S_contig99810.31866.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=57bp
MLHIVIFDEIDAICKTRGTVRDGTGVSDSVVNQLLSKIDGVDSLNNVLII
GMTNRKV
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mRNA from alignment at Ecto-sp8_S_contig99810:289..483-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99810.31866.1 ID=mRNA_Ecto-sp8_S_contig99810.31866.1|Name=mRNA_Ecto-sp8_S_contig99810.31866.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99810:289..483- (Ectocarpus species8 EcLAC_412)
CAGGCGGACCAGGGCGAGGCCAGCATGCTTCACATCGTCATCTTCGACGA
GATCGACGCCATCTGCAAGACCAGAGGGACCGTCAGGGACGGCACCGGCG
TGTCGGACTCGGTGGTGAACCAGCTCCTCTCCAAGATCGACGGCGTGGAC
TCCCTCAACAACGTTCTCATCATCGGGATGACCAACCGCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99810:289..483-

>mRNA_Ecto-sp8_S_contig99810.31866.1 ID=mRNA_Ecto-sp8_S_contig99810.31866.1|Name=mRNA_Ecto-sp8_S_contig99810.31866.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99810:289..483- (Ectocarpus species8 EcLAC_412)
ATGCTTCACATCGTCATCTTCGACGAGATCGACGCCATCTGCAAGACCAG
AGGGACCGTCAGGGACGGCACCGGCGTGTCGGACTCGGTGGTGAACCAGC
TCCTCTCCAAGATCGACGGCGTGGACTCCCTCAACAACGTTCTCATCATC
GGGATGACCAACCGCAAGGTG
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