mRNA_Ecto-sp8_S_contig9977.31857.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9977.31857.1
Unique NamemRNA_Ecto-sp8_S_contig9977.31857.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9977.31857.1 vs. uniprot
Match: D7FU52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU52_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 3.570e-44
Identity = 94/140 (67.14%), Postives = 108/140 (77.14%), Query Frame = 1 
Query:   79 LSKTKDKQLSI-DTHSETSRRMNKFMMVAFGLAVIRQTVFSPAAGSTSGAVSAEELAGFAERFARSCLLARSSDESEALLSWPAVSAGAARAACLGGWSCAAGDVLDEGTFFLLELGWKTLINLIILRSLRFLALRFQGP 495
            LSK K  QLS  D+ SE SRRMN F++VAFG A+I+Q + S     T GAVSA + A FAE  ARSCLLA+ SD+SEA+L WPA+SAGAARA CLG  SCAAG +LDEGT FL E+G KT+INLIILRSLRFLA RFQGP
Sbjct:    2 LSKKKGNQLSTRDSPSEISRRMNNFIVVAFGAALIQQ-LLSLLTTDTPGAVSAGDAADFAESSARSCLLAQPSDQSEAVLPWPAISAGAARAVCLG-LSCAAGGMLDEGTLFLFEVGLKTIINLIILRSLRFLAPRFQGP 139
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BLAST of mRNA_Ecto-sp8_S_contig9977.31857.1 vs. uniprot
Match: A0A6H5K6L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.660e-40
Identity = 81/120 (67.50%), Postives = 91/120 (75.83%), Query Frame = 1 
Query:  139 MNKFMMVAFGLAVIRQTVFSPAAGSTSGAVSAEELAGFAERFARSCLLARSSDESEALLSWPAVSAGAARAACLGGWSCAAGDVLDEGTFFLLELGWKTLINLIILRSLRFLALRFQGPF 498
            MNK  MVAFGLA + Q + S     T GA +A++ AGFAE    SCLLA+SSDESEALLSWPA+SAGAA AACLGG SCAAG +LDE T FL E+G KT+INLIILRS  FL  RFQGPF
Sbjct:    1 MNKLTMVAFGLA-LAQKLLSSLTTDTPGAATADDAAGFAESLTWSCLLAQSSDESEALLSWPALSAGAASAACLGGLSCAAGGMLDEATLFLFEVGLKTIINLIILRSPSFLTPRFQGPF 119
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BLAST of mRNA_Ecto-sp8_S_contig9977.31857.1 vs. uniprot
Match: A0A6H5JFL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.660e-40
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:  139 MNKFMMVAFGLAVIRQTVFSPAAGSTSGAVSAEELAGFAERFARSCLLARSSDESEALLSWPAVSAGAARAACLGGWSCAAGDVLDEGTFFLLELGWKTLINLIILRSLRFLALRFQGP 495
            MN+ +MVAFG+AVI+Q + S     T GAVSAE+ A FAE FARSCLL +  D+SEAL+ WPAVSAGAARAACL G SC AG +LD+GT FL E+G KT INLII+RSLRFLA  FQGP
Sbjct:    1 MNELIMVAFGVAVIQQ-LLSSLTTDTPGAVSAEDAADFAESFARSCLLPQPPDQSEALVPWPAVSAGAARAACLVGLSCVAGGMLDKGTLFLFEVGLKTFINLIIIRSLRFLASMFQGP 118
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BLAST of mRNA_Ecto-sp8_S_contig9977.31857.1 vs. uniprot
Match: D7G967_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G967_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.330e-35
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:  130 SRRMNKFMMVAFGLAVIRQTVFSPAAGSTSGAVSAEELAGFAERFARSCLLARSSDESEALLSWPAVSAGAARAACLG 363
            SRRMNKFMMVA GLAVI++  FSPAAGSTSGAVS EELAGFAERFARSCLLARSS+ESEALLSWPAVSAGAARAACLG
Sbjct:    2 SRRMNKFMMVAIGLAVIQRAFFSPAAGSTSGAVSGEELAGFAERFARSCLLARSSEESEALLSWPAVSAGAARAACLG 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9977.31857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FU52_ECTSI3.570e-4467.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6L0_9PHAE6.660e-4067.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFL5_9PHAE6.660e-4067.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G967_ECTSI1.330e-3591.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9977contigEcto-sp8_S_contig9977:1793..6882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size503
Hectar predicted targeting categoryother localisation
Exons5
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145367.4906638-CDS-Ecto-sp8_S_contig9977:1792..18431681145367.4906638-CDS-Ecto-sp8_S_contig9977:1792..1843Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9977 1793..1843 -
1681145367.5084403-CDS-Ecto-sp8_S_contig9977:2514..26031681145367.5084403-CDS-Ecto-sp8_S_contig9977:2514..2603Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9977 2515..2603 -
1681145367.5237868-CDS-Ecto-sp8_S_contig9977:3648..37071681145367.5237868-CDS-Ecto-sp8_S_contig9977:3648..3707Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9977 3649..3707 -
1681145367.5391355-CDS-Ecto-sp8_S_contig9977:4012..41901681145367.5391355-CDS-Ecto-sp8_S_contig9977:4012..4190Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9977 4013..4190 -
1681145367.5554664-CDS-Ecto-sp8_S_contig9977:6758..68821681145367.5554664-CDS-Ecto-sp8_S_contig9977:6758..6882Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9977 6759..6882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9977.31857.1prot_Ecto-sp8_S_contig9977.31857.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9977 1793..6882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9977.31857.1

>prot_Ecto-sp8_S_contig9977.31857.1 ID=prot_Ecto-sp8_S_contig9977.31857.1|Name=mRNA_Ecto-sp8_S_contig9977.31857.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=167bp
RDQISIVREGEHVRKEEKPSVTTSLPLSKTKDKQLSIDTHSETSRRMNKF
MMVAFGLAVIRQTVFSPAAGSTSGAVSAEELAGFAERFARSCLLARSSDE
SEALLSWPAVSAGAARAACLGGWSCAAGDVLDEGTFFLLELGWKTLINLI
ILRSLRFLALRFQGPF*
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mRNA from alignment at Ecto-sp8_S_contig9977:1793..6882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9977.31857.1 ID=mRNA_Ecto-sp8_S_contig9977.31857.1|Name=mRNA_Ecto-sp8_S_contig9977.31857.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5090bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9977:1793..6882- (Ectocarpus species8 EcLAC_412)
AGAGACCAGATATCGATCGTTCGAGAGGGAGAGCACGTCCGTAAAGAAGA
GAAGCCGAGCGTGACAACAAGCCTCCCTCTTTCGAAGACGAAGGACAAGC
AACTTTCGATCGACACACACAGCGGTGAGAAGAGCACGACCTGCAGTCGC
CTGTGAAAGAAACAAGCAGATTTTTTTCCGCCGTTTTCTACAGAACCAAA
GGAGCTACTGCTGTATGATGACGCTTCGATCGGCCGCGTGAAACATCACG
GCTATTTTGGCGCTGTATCTTTTCGAAGGCCTTCTTCGCGAATCCAGCTA
CATACGTACACTACGCGTTGCGGTGCCCTAGCATGCGGGAAGGGCCCGTC
CCATCACTGAATCCCTCACCACCTTCCGTTTCCGGAGATGAGCCGTCTCC
CTGCTTCACCCGCCTGTTGGATGCTCATATTCATGACATATATCATTGTC
ATGCGGCTCTTCCGCTGTCGTAACGTTGATTGAGCAGTTTTATGTACCTT
TTATGGCGCGCTCCCCCCCTCTCTCTCTACCGTCCAAAACCATTTCGATG
TCGTGTACAACGTACGTACAACACCTGGGACAGAGCCGAGCCTACCTAAA
CATTTGTTGTTGCTCTTCTATCAAGCATCTCCATCACGTGCACATGCATG
CCGCATGTAGTTTGCGCTTGAGATCTGCTTTTTTCCCTGGCAACAACTGA
TGGGCGGGTTTTCCGACCCTCTGTCTTTGATGGATAGGGGCGCAAGGTTT
TACCTTCAAGAGGTTCAAGGTTGCAGTTGCTTTCGTAATGATTGAAGCCG
GTGAATATTAGCGCTGTCAGGTTAATGTGGTAAGTGGCGCGAGAGAGTGA
GGGAGAGAACAACAAAGAGTTAGGGGAGGGGGCCGAGGGAGTACAACAAC
GGGCACGCGCGTGAGCGGTGTACGAGTGCTCGAGGTCCGACCATGGCGTG
GACCATTTTTTCATGGAAGGCTGATGTTCCGGCCTGCGTTTTTTTCTCCT
TACAGTAAATGAACAAAAGCCTGGTGCTCTGAAATGTACTATTTACTGCT
TCTTCTGCGTTTCCTCACCCCCCTCCGCTTCCACACTCTCCAAAGACAAA
GAGTGCCATGCAGTTTGCTTTCGTTCAATATTACCCCCGACATGTATGTG
TGCACAGACCTCTCGAGATCCCACGGAACAACAACACCAGTTAGACGTAA
ACCACCCTATCACGTGCCGGATTGTGCGCCAATCCCCGACGTGTTTTTTT
GTGTTTTTTCAAGCCGTCATCATCCGCCACTCTTTATTTTTGGTTGCATT
CAAAACAGTCGTTGGCACGACTGATCCCTCTTTTTTTCGATCGATCATAG
AGAATCGACGACAATCGTCGCACCGGCGGCACACATACATACATGCGTTC
TCACCAATGTAGTCTGACTGCCTGCATGCATCTGAATAGAACAAACGAGG
CATTATTCCCCGCAGAAAAGGGCGTTATTTTATGTTCCGTGACTACACCG
CTCACCTCCCCGTCCGCTCTCTGCTCGCGTCGGGCCCTTTCTTGCAAACG
GCACGTGAAGTGATATGATGCTCCCACTCGTCGCCCATGTTGCCAGCAAT
CCGGCCACCTTCTTCCCCCCCGCACCAGTAGCAGATAGGCCCTGCTAGCT
GTTCCCGAATCCTTCCCGCGTCTTCTGGGGAACAGATAGGGCACCTGCTA
TGACTGCTGTTAAAATCCGTGTTTAAGAAACGTCAGTTTGGAGTCTCGAG
GACACCTTTATTTCTTACTTTATTTCGTTACCACCATCTGGCATACATCA
CTAGATGTAGGAGTTTAGTGTAGGATCATCTACGGCTGAGGCGTGTTTCT
TGTTACGTCATTTCTGTTTTCATATTGATCGTCAATATCTGAGCCTGTCT
TTGTTTCTTAAAGGTCTGTGTCGTAATCGCGGGAGCCAACTGCACAATGT
AACAGCAGTGGCTTATTTTTCTCTCAGTCGGTGGCCTCTCTAAAAATCGA
GGGCGGCAAGGACCGCGGTAGGCTCCGTGATCTGATCATCTGACCGTTGA
CAAGGAGCCCAGAGATATGTAGAAAAAAAACAAATCGGTGGCCACAGAGA
ACAAACCTGTCGTTTTACATACTTTTCCCACAAGGTGTCTTCCCCATCGC
CTTCTCTCACGAGCACACCCTCGAAACGGACTAGTCTAGATGATGGTTGC
ACGACGGGCGACCATCAGATGGTTCAGTCAGTATACGTTGACGAGACGAG
CGGCGGTTAGTAACCTTTTTTACGTTTGCCACGAGGAGTCTCCTCCATCG
CCTTCCTTCATGATCACACCCGCGAAACGGACTAGTCTGCATGATGTTTG
CGCCAAGGGCCACCATCAGATGGCTTGGTCAATGTTGTTGGCGAGGCGAC
CAGCGAGAAGTCGGGGTCATTACATCACAATGTGTCCATCGCCTTCTCTC
ATGAGCACACCCTCGAAACAGCGTAGTCTTCACGAGGTTTGCATCAAGGA
CGGCCATCAGATGGCTCCGTCAATATTGTGTGTCGTCTCGTCCGCGACTG
GCACCGGTAACTCTCTCCATAACAACTCGGTGGAAGAGGCCCTTCATCCA
TCCCCTCCCTCTTCAAGCAGCAGCATCAGCAGCGCTGATTTCGGTGTGCC
CCGTCCCCCTCCCTACGGTACGCGTTTTTTTTGTTTTTTCAGAAACGTCC
CGCAGGATGAACAAGTTCATGATGGTCGCCTTCGGCTTAGCCGTTATCCG
GCAGACCGTTTTTTCACCAGCCGCGGGGAGCACGTCAGGAGCGGTTTCCG
CGGAAGAATTGGCCGGCTTTGCCGAACGCTTTGCGAGGAGCTGCTTGTTG
GCCCGGTCCTCCGATGAAAGGTGTGTGTATACTAATCATGTGGAGCTCTC
ACACCACTTCTTTCTGCTGCATGAGAGGCATCATATAGCCCCCGGCCAAA
AAACGGAGTTGATACGCTTCGAGAGTTCGCATCTGCGTGTGTCGGTCAAA
TTATATTTTTCTGAACGCCGGCAGCCGTCCAAAATTTGCTGTGAATTTGT
CGGGACGTATGTTGGCGATACCAAAAACTGTGTCTTTGGAGGAGTGTGTC
TCCGGTTTCCCCGCCCAATCCGCCTTTTTCCCCATTCGCGCGCCCGAACG
ACGTTTCGCACAAAAAACGATGCAGCGAGGCCCTCCTATCGTGGCCCGCT
GTCTCCGCGGGTGCTGCAAGAGCGGCATGCCTCGGTACGCTTTTTTTTTA
TTGTGTTTTTTTTTCGACCGTTTCGGGTTGAAAAACCTTACACGCTCGTG
TATTGCTAACTCGCTCTCTCGTTGTTTACGCGCACCCCCCTCGTTGGCAA
TCCCGCCGCCGCGAGTACACCCTGGCTTGCGTCCTATTTTGGTCGATGTT
GAGCTAACATGAGCTCACCCTTGTGCGTGTAGGTGGTGTTTGCTAGGATC
GATCCACGCAAACTGTCTGGTGATGAAAAGTGTATGTGTGTGTTCGTGCC
ATCTTTTCTGGCGCCAGTCTGCACGTCAATGAACCTCTCGATGTACCTTC
CTGACGGATCAGCTGGGGTAACACAGGCGGGAGAGGTCGCGCAGGAGTTT
TTTCTTTATTAGCCCCACGCAGGCCCGAGGCGTATTCTCGCACAAGCTAC
AGTAGTAATGGCGCCGCACCTCCCTCCCGGCCGCGAAGTTTTTTTACCTT
GCCCTCTCTCTCTCTGCACATTGAAGCAGAACAGGGATCGGTTTGCTGGC
CCCCACGTTTCCCTCAACGGTCGCACTGCTAGATACGTACACGTGTAAAT
TGTTTTTGAGGCACTAGGGTTGGTTGAATCGTCGTTCCCCTTTTGCGGCT
CACTTGACAACCGCGCACAATGCCAGGATGGTCACGCCCAGGTCTTTTAC
TCAGCTTCGCGCGTGCGTTGTCTCTCCCTCTCTCTCCCTCTCTCTTCTCT
CTTTCTGTCTGTCTGCCTTTTCTCTTTCTGTCTGTCTGCCTTTTCTCTGT
CTGTCTGTCTCTCTGTCTGTCTGTCTGTCTGTGGGTGTATCTCTCTCTCT
CTCTCTCTATCTATCTCTCTCACTCTCGCTTTCTCTGTCTCTCTGTCTGT
CTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCTCTCGCTTTCTCTCTGTCTCTCTGTCTCTATGTCTCTCTCTCT
CTCTCTGTGTCTCTCTGTCTCTCTTCCTCTGTCCCTCTCTCATTCTCTCT
CTCTAACATACGGCGCCATCAATGCCCAGGAGGGTGGAGCTGTGCAGCAG
GAGACGTGTTGGACGAGGGCACCTTCTTCCTGCTGGAGTTGGGGTGGAAG
ACCTTGATTAATTTAATTGTGAGAAGTGGGGTTGCACACGCATATGGTGC
TAAAGATGTTGAGAGTGTTTTGAAAGATCGTCCAGGTTCCGACGTCGTTT
GTTTTTGCGTTTTGCGTGTTTCGGGAACCCATTGGCATTCATGCTGGCTT
CGTGTTTTTGTTTTCTTACGAAAAGCACAACAAATCCATTGCTTCCACAG
ATGAACGTCCGTGATGCGTACAGCGACCAACCTGTATTCTCATGGTTTCC
CGGGCAGCGTACAGCTATTATCTCCCCTGCGGGTAACAGGCCCGACAAGA
CACTTAGGTGGCCATCGTGTGTATCCGACTGTATGTTGTGCTGGGGAGTT
TTTCCTCGCATTTCGGTACAGGTTTATTGCCCCTCTTACCAGTGTCTATC
ATACCCCAAGTCCTGATCACCGCTCACTCTGCTGCCTCGTCGAACAAAAG
CCGGGCCGATGGAAGGGTCTTCGGCCGCTAACGTTTGTCTTCATTTTCTC
CTACGGCCTTCCCTCCTCGTTGAATATTTGCCTTGGGCAATATCGCTGTT
CGCGAGAAGGGATCGGCCTGAACACAACCCCCACCACACACCGATGGCCA
CGTCGACTGCTCGTAATGGTATCGGAGAGGTGGTTTCCCAATAACGTGGT
GACGCTCACATCCCGTCGTATGTGCGTGTGCTCCGACAGATACTCCGAAG
CCTGCGTTTCCTCGCGCTGAGGTTTCAAGGACCATTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9977:1793..6882-

>mRNA_Ecto-sp8_S_contig9977.31857.1 ID=mRNA_Ecto-sp8_S_contig9977.31857.1|Name=mRNA_Ecto-sp8_S_contig9977.31857.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9977:1793..6882- (Ectocarpus species8 EcLAC_412)
AGAGACCAGATATCGATCGTTCGAGAGGGAGAGCACGTCCGTAAAGAAGA
GAAGCCGAGCGTGACAACAAGCCTCCCTCTTTCGAAGACGAAGGACAAGC
AACTTTCGATCGACACACACAGCGAAACGTCCCGCAGGATGAACAAGTTC
ATGATGGTCGCCTTCGGCTTAGCCGTTATCCGGCAGACCGTTTTTTCACC
AGCCGCGGGGAGCACGTCAGGAGCGGTTTCCGCGGAAGAATTGGCCGGCT
TTGCCGAACGCTTTGCGAGGAGCTGCTTGTTGGCCCGGTCCTCCGATGAA
AGCGAGGCCCTCCTATCGTGGCCCGCTGTCTCCGCGGGTGCTGCAAGAGC
GGCATGCCTCGGAGGGTGGAGCTGTGCAGCAGGAGACGTGTTGGACGAGG
GCACCTTCTTCCTGCTGGAGTTGGGGTGGAAGACCTTGATTAATTTAATT
ATACTCCGAAGCCTGCGTTTCCTCGCGCTGAGGTTTCAAGGACCATTCTA
A
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