mRNA_Ecto-sp8_S_contig9974.31850.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9974.31850.1
Unique NamemRNA_Ecto-sp8_S_contig9974.31850.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9974.31850.1 vs. uniprot
Match: A0A6H5K6R3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6R3_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 4.260e-107
Identity = 165/189 (87.30%), Postives = 172/189 (91.01%), Query Frame = 1 
Query:    1 WLLGQFGILPPKVVPVARTKQTVPRKEWKELQKQQAGGKGFHTSAACFSALQPGAGEPASDPLARTLFSASDDGELTNGIATRRPWSSVSQSPSLETGPWSFWWGTGAERETHHNGEGIRTTASGSDELGGDIALDLSRMSLTGRSAGEQQARSPLLAVLASHLRLLGPAACSVIGLRVDAEEEARDTR 567
            WLLGQFGILPPKVVPVARTKQTVPRKEWKELQK+QAGGKGFHTSAACF+ALQPGAGEPASD   RTLFSASDDGEL++GIATRRP S+VSQSP LETGP S WWGTGAERETH NGE + TTASG DELGG IALDLSRMSLT RSAG+QQA SPL AVLASHL LLGPAACSVIGL VDAEEEARDTR
Sbjct:   75 WLLGQFGILPPKVVPVARTKQTVPRKEWKELQKKQAGGKGFHTSAACFNALQPGAGEPASDSPPRTLFSASDDGELSDGIATRRPSSAVSQSPPLETGPLSSWWGTGAERETHRNGEAVSTTASGPDELGGGIALDLSRMSLTERSAGDQQAWSPLRAVLASHLSLLGPAACSVIGLLVDAEEEARDTR 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9974.31850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6R3_9PHAE4.260e-10787.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9974contigEcto-sp8_S_contig9974:1..1093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score357.8
Seed ortholog evalue3e-96
Seed eggNOG ortholog2880.D8LTT8
Model size570
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000313,GO:0000314,GO:0003006,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019866,GO:0019904,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.ribosomal protein s16
EggNOG OGsCOG0228@1,KOG3419@2759
Ec32 ortholog descriptionRibosomal protein S16 domain
Ec32 orthologEc-28_002810.1
Cds size570
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145366.9554703-CDS-Ecto-sp8_S_contig9974:0..151681145366.9554703-CDS-Ecto-sp8_S_contig9974:0..15Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9974 1..15 +
1681145366.971793-CDS-Ecto-sp8_S_contig9974:538..10931681145366.971793-CDS-Ecto-sp8_S_contig9974:538..1093Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9974 539..1093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9974.31850.1prot_Ecto-sp8_S_contig9974.31850.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9974 1..1093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9974.31850.1

>prot_Ecto-sp8_S_contig9974.31850.1 ID=prot_Ecto-sp8_S_contig9974.31850.1|Name=mRNA_Ecto-sp8_S_contig9974.31850.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=190bp
WLLGQFGILPPKVVPVARTKQTVPRKEWKELQKQQAGGKGFHTSAACFSA
LQPGAGEPASDPLARTLFSASDDGELTNGIATRRPWSSVSQSPSLETGPW
SFWWGTGAERETHHNGEGIRTTASGSDELGGDIALDLSRMSLTGRSAGEQ
QARSPLLAVLASHLRLLGPAACSVIGLRVDAEEEARDTR*
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mRNA from alignment at Ecto-sp8_S_contig9974:1..1093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9974.31850.1 ID=mRNA_Ecto-sp8_S_contig9974.31850.1|Name=mRNA_Ecto-sp8_S_contig9974.31850.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1093bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9974:1..1093+ (Ectocarpus species8 EcLAC_412)
TGGCTTCTGGGGCAGGTGAGGTATAGTAGCGGTTGCATCTTGTTGGTGGG
TGGTTGTTGCCTGCGCGTGAAAATGTCGTTTTGCAGTACCTCTCCTTTTT
TATCCTGCACGCTGGTTTACAGTGAGATAATTGTTAAGTTTCCTGGTGTT
GTTTCAGCCTTCATCTTGAGGCAAACAGCGCCAAGCTGAGTCATGGATTG
TCTCGCGCCCAATATCGAAGTGCTCTAGCGAGCAATGGCTTGGTGGCATC
CCGCCTTTCGGGCCCACATGTAGAGCAGTGGGACCTCACTCGCGCGTACC
TCACCCCGTCGATGCCGACCTACCCTCCGTGCATGGCCTGTCCAGCATCT
ACTCGCTGAACGCAAATGTAACTTCGTAATGCCGGTGGACCTCAGCGCAT
TCCGCATGTTTGTCGCCACGTTTTTTTCTGCTTTCTCCTCCTTTGTTCAC
TCCACAAACACCCACATGTTTGTTCCCTGTTCCACCGCGCGCACATCCGA
TTGCGTCCGATTCTCTCCCTCCCCCCCCCCGACCCTAGTTCGGAATACTA
CCGCCCAAGGTTGTCCCCGTAGCACGGACGAAGCAGACAGTACCGAGGAA
GGAGTGGAAGGAGCTCCAGAAGCAGCAGGCTGGGGGCAAAGGTTTCCACA
CGTCGGCGGCGTGTTTCAGCGCTCTCCAGCCCGGGGCTGGCGAGCCAGCT
AGTGACCCCCTCGCACGGACTCTCTTTTCGGCCAGCGACGACGGTGAACT
AACCAACGGAATCGCGACGCGGCGACCGTGGAGCAGTGTGTCCCAGTCTC
CGTCGCTTGAGACTGGACCTTGGTCCTTCTGGTGGGGAACGGGAGCAGAG
AGAGAAACACACCACAACGGCGAGGGCATTCGCACGACGGCTAGCGGGTC
GGATGAGCTCGGCGGTGATATCGCTCTTGATTTGTCTCGAATGTCGCTGA
CTGGACGCAGCGCGGGGGAGCAGCAAGCGCGGTCGCCGCTCCTCGCCGTT
CTTGCTTCGCACCTCCGCCTTCTCGGCCCTGCCGCCTGCTCCGTGATTGG
TCTACGGGTGGACGCGGAGGAGGAGGCTCGGGATACACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9974:1..1093+

>mRNA_Ecto-sp8_S_contig9974.31850.1 ID=mRNA_Ecto-sp8_S_contig9974.31850.1|Name=mRNA_Ecto-sp8_S_contig9974.31850.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9974:1..1093+ (Ectocarpus species8 EcLAC_412)
TGGCTTCTGGGGCAGTTCGGAATACTACCGCCCAAGGTTGTCCCCGTAGC
ACGGACGAAGCAGACAGTACCGAGGAAGGAGTGGAAGGAGCTCCAGAAGC
AGCAGGCTGGGGGCAAAGGTTTCCACACGTCGGCGGCGTGTTTCAGCGCT
CTCCAGCCCGGGGCTGGCGAGCCAGCTAGTGACCCCCTCGCACGGACTCT
CTTTTCGGCCAGCGACGACGGTGAACTAACCAACGGAATCGCGACGCGGC
GACCGTGGAGCAGTGTGTCCCAGTCTCCGTCGCTTGAGACTGGACCTTGG
TCCTTCTGGTGGGGAACGGGAGCAGAGAGAGAAACACACCACAACGGCGA
GGGCATTCGCACGACGGCTAGCGGGTCGGATGAGCTCGGCGGTGATATCG
CTCTTGATTTGTCTCGAATGTCGCTGACTGGACGCAGCGCGGGGGAGCAG
CAAGCGCGGTCGCCGCTCCTCGCCGTTCTTGCTTCGCACCTCCGCCTTCT
CGGCCCTGCCGCCTGCTCCGTGATTGGTCTACGGGTGGACGCGGAGGAGG
AGGCTCGGGATACACGGTGA
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