mRNA_Ecto-sp8_S_contig9964.31838.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9964.31838.1
Unique NamemRNA_Ecto-sp8_S_contig9964.31838.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9964.31838.1 vs. uniprot
Match: D7G9I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I6_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 8.740e-68
Identity = 168/192 (87.50%), Postives = 172/192 (89.58%), Query Frame = 1 
Query:  235 QGQRQDGGTATGRSSAQEFMQQQRGHQRQHGNAEDGEELSFEEPAMAPVNPGALPTRLGTGFSFGQTAAPSAAGSRGSGKRRAGTRSQDKKLPQSRPARMGGGGSGASSVDVGLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSGLAGGAGVGVPAVNEAAAAFKEAWLKGKEEEAARDREQW 810
            Q QR+DG TATGRSSAQEFMQQQRGHQRQHGNAE+GEELSF+EPAMAPVN G LPTRLGTGFSFGQTAAPSAAGSRGSGKRRAGTRSQDKKLPQSRPARMG               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGSGLAGGAGVGVPAVNEAAAAFKEAWL+GKEEEAARDREQW
Sbjct:   37 QEQRKDGDTATGRSSAQEFMQQQRGHQRQHGNAENGEELSFDEPAMAPVNSGPLPTRLGTGFSFGQTAAPSAAGSRGSGKRRAGTRSQDKKLPQSRPARMGX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSGLAGGAGVGVPAVNEAAAAFKEAWLRGKEEEAARDREQW 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9964.31838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9I6_ECTSI8.740e-6887.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9964contigEcto-sp8_S_contig9964:272..2411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size814
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-00_011450.1
Cds size813
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145366.2064333-CDS-Ecto-sp8_S_contig9964:271..6051681145366.2064333-CDS-Ecto-sp8_S_contig9964:271..605Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9964 272..605 -
1681145366.2186248-CDS-Ecto-sp8_S_contig9964:1571..17141681145366.2186248-CDS-Ecto-sp8_S_contig9964:1571..1714Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9964 1572..1714 -
1681145366.2314394-CDS-Ecto-sp8_S_contig9964:2075..24111681145366.2314394-CDS-Ecto-sp8_S_contig9964:2075..2411Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9964 2076..2411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9964.31838.1prot_Ecto-sp8_S_contig9964.31838.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9964 272..2411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9964.31838.1

>prot_Ecto-sp8_S_contig9964.31838.1 ID=prot_Ecto-sp8_S_contig9964.31838.1|Name=mRNA_Ecto-sp8_S_contig9964.31838.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=271bp
EGPAINGERRQQRQHPPPGSAAAPAPAPALAPAASAPPPFVFMFGSPPAG
ARQGVSPPPPPPPPPPPRFRFRAGATGQQGQRQDGGTATGRSSAQEFMQQ
QRGHQRQHGNAEDGEELSFEEPAMAPVNPGALPTRLGTGFSFGQTAAPSA
AGSRGSGKRRAGTRSQDKKLPQSRPARMGGGGSGASSVDVGLLRRQQHQR
MQKTQEPTAHGGGGGGGGGIFAPPGGGAAGSGLAGGAGVGVPAVNEAAAA
FKEAWLKGKEEEAARDREQW*
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mRNA from alignment at Ecto-sp8_S_contig9964:272..2411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9964.31838.1 ID=mRNA_Ecto-sp8_S_contig9964.31838.1|Name=mRNA_Ecto-sp8_S_contig9964.31838.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2140bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9964:272..2411- (Ectocarpus species8 EcLAC_412)
GAAGGACCGGCGATCAATGGAGAGCGGCGGCAGCAGCGGCAGCATCCTCC
CCCGGGTAGCGCTGCGGCACCGGCACCGGCACCGGCATTGGCACCGGCAG
CTTCTGCCCCGCCTCCGTTTGTGTTCATGTTCGGGTCGCCGCCGGCCGGA
GCACGGCAGGGCGTTAGCCCCCCGCCGCCGCCACCACCGCCGCCGCCGCC
AAGGTTCAGGTTCAGGGCCGGTGCGACGGGCCAGCAGGGGCAAAGGCAGG
ACGGGGGCACCGCCACGGGCAGGAGCTCCGCGCAGGAGTTCATGCAGCAG
CAGCGCGGACACCAACGCCAGCACGGAAACGCGGAGGCAAGCAAGGCTTG
GAATTGTCCGAGCTGTATTTTGTTGTTTTCTCTCTTCGGGAGGCTTATCT
TCTTTATAGACTTGTTAGGGGCCAGAATGACCTAATCGGGTATCCAAGAT
GCCGCCGTTTATTGAAACAGTTGTAGCACTGCCTTTTGCTGGTCGCAGGC
TGTGGAACCTGCTCGAAGAGACGCTCATCAGCTTCCAAGCAGCTGTCGAC
CTGTTCACGCGAAAAATATCTACCAGTATCTTTTTTTCTCTTCAATTGAC
AAGTACCTACGTGTGGCAGATTATATTTTCCTCCATAACCCCACCAGCGG
CCGGCCATGTTCTTGATACTACGTGTTTTCTACTGCTGTTACAATAGGAT
GGCGAGGAATTGAGCTTTGAGGAGCCGGCGATGGCACCGGTGAACCCGGG
GGCGCTTCCCACTCGTCTCGGAACGGGTTTCAGCTTCGGGCAGACGGCGG
CGCCTTCGGCAGCGGGCAGTAGGGGATCGGGGAAGCGCAGGTATGCCAAC
TGACCCCCCCCCCCTTCTCTTTCTCTTTAAATTTATTTCTCTGTTGCCTC
TTGTCTCTCTCGCTGCTAGTGGTTCACTGTGAGATATCCCGTGCTGTGTC
TGGACGTACGTCTCGGTGGAGACGTGTTTTGTGGTTCGTGTTTACGTGTG
TCTTGGTCGGTTCCCTGCCGTCGTGCGGCGCTTGTTGCTGGTTTTTCTGG
TCGTCGCTTTGTGTCGTTCTCGTCAGATCCCGTCTCCTCTTTCGTGTTGG
TTTTCTTGTTCTTGTTGGTTTAGCCCACCCGTCCTCTGGCAATGTAGTTG
CGGAGTTCGTTGTACAAGAAGGAGAGGGAAATGTACATGACTGAGCTGGG
AAAAGTAGAAGGAAGGTACAGGGAGATGTTTGAGGCATAGAATAGAGAGG
AAAAGACTATAACCGTACTGGGGCGTAGGAAGTGGGTTCAAAAGGCGGGA
AGTGATATCGGTAGGATAGATAGGGACGACATTTTTGAGCCACCTTCGGC
AAAGTAGGAAGAAACGATTGGCTATCGGCGATCGGTCCTGTGGGAACAAT
GCTCAGTCCTCTCGAGGACGCGTGGGCAATGGTATAACCGCTAAGGCATG
CAAAACATGAGAGTAAGCCCCCCCGTCCGTCCGTCCTATGGCAATACGGT
AGGTAGCCCTCCCCTCCCCTCCTGCCATGCGCATGTCATGCCGACTCTTT
CTTCGCGTTGGCACCCGTGGCCGTGTGTCGATATGACGCAAGTCGCGCGC
ATATTCCAGAGAACGATACTTGTTGCGACACTGGTGCGTCCATCTCCAGG
GCCCGTATACGTGAGGTCGCTTGTGAGCACTGCCACTTTGTCGCGGAACA
GCCAGCCGTCGGCTTCAACCCCCGTAGCAATCGATATTGCTGTTTGACGT
GCGCTTGCCGGTGACGTTGTAATCTTGCTTGTGCCTTTTTGTCTTGGGTG
GAACAGGGCCGGCACCCGGAGCCAAGACAAGAAATTGCCACAGTCCCGCC
CCGCCAGAATGGGCGGCGGCGGCAGCGGCGCATCTTCCGTTGACGTCGGC
CTGCTCCGCAGACAGCAGCACCAGCGCATGCAGAAAACGCAGGAGCCAAC
GGCACACGGTGGTGGTGGTGGTGGTGGTGGTGGTATTTTCGCGCCGCCGG
GGGGGGGTGCGGCAGGATCGGGGTTGGCCGGAGGGGCTGGCGTGGGTGTG
CCGGCGGTGAACGAGGCGGCCGCTGCCTTCAAGGAGGCGTGGCTGAAGGG
CAAAGAGGAGGAGGCGGCGAGGGATCGTGAGCAATGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9964:272..2411-

>mRNA_Ecto-sp8_S_contig9964.31838.1 ID=mRNA_Ecto-sp8_S_contig9964.31838.1|Name=mRNA_Ecto-sp8_S_contig9964.31838.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9964:272..2411- (Ectocarpus species8 EcLAC_412)
GAAGGACCGGCGATCAATGGAGAGCGGCGGCAGCAGCGGCAGCATCCTCC
CCCGGGTAGCGCTGCGGCACCGGCACCGGCACCGGCATTGGCACCGGCAG
CTTCTGCCCCGCCTCCGTTTGTGTTCATGTTCGGGTCGCCGCCGGCCGGA
GCACGGCAGGGCGTTAGCCCCCCGCCGCCGCCACCACCGCCGCCGCCGCC
AAGGTTCAGGTTCAGGGCCGGTGCGACGGGCCAGCAGGGGCAAAGGCAGG
ACGGGGGCACCGCCACGGGCAGGAGCTCCGCGCAGGAGTTCATGCAGCAG
CAGCGCGGACACCAACGCCAGCACGGAAACGCGGAGGATGGCGAGGAATT
GAGCTTTGAGGAGCCGGCGATGGCACCGGTGAACCCGGGGGCGCTTCCCA
CTCGTCTCGGAACGGGTTTCAGCTTCGGGCAGACGGCGGCGCCTTCGGCA
GCGGGCAGTAGGGGATCGGGGAAGCGCAGGGCCGGCACCCGGAGCCAAGA
CAAGAAATTGCCACAGTCCCGCCCCGCCAGAATGGGCGGCGGCGGCAGCG
GCGCATCTTCCGTTGACGTCGGCCTGCTCCGCAGACAGCAGCACCAGCGC
ATGCAGAAAACGCAGGAGCCAACGGCACACGGTGGTGGTGGTGGTGGTGG
TGGTGGTATTTTCGCGCCGCCGGGGGGGGGTGCGGCAGGATCGGGGTTGG
CCGGAGGGGCTGGCGTGGGTGTGCCGGCGGTGAACGAGGCGGCCGCTGCC
TTCAAGGAGGCGTGGCTGAAGGGCAAAGAGGAGGAGGCGGCGAGGGATCG
TGAGCAATGGTGA
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