mRNA_Ecto-sp8_S_contig99633.31836.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99633.31836.1
Unique NamemRNA_Ecto-sp8_S_contig99633.31836.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A6H5JC07_9PHAE (Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC07_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.250e-30
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1
Query:    1 EVEAHVQSSGGPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
            EVEAHVQSSGGPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD
Sbjct:  135 EVEAHVQSSGGPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 191          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A7S2V2U6_9STRA (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2U6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.010e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:   13 HVQSSGGPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
             +  +G P PGLAVVLVG+RRDSATYVRMKKKAC+E+G++S+GFDFP DVTQ+
Sbjct:   97 ELTGTGAPAPGLAVVLVGERRDSATYVRMKKKACEEVGITSYGFDFPADVTQE 149          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A6V1WRV7_HETAK (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WRV7_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 7.830e-19
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 1
Query:   13 HVQSSGGPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
             ++ +GGP PGLAVVL+G+RRDSATYVRMKKKAC+E+G++SFG DFP  VTQ+
Sbjct:   98 ELKEAGGPTPGLAVVLIGERRDSATYVRMKKKACEEVGITSFGHDFPTSVTQE 150          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A836CNA2_9STRA (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.450e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   31 GPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQ 168
            G  PGLAVVLVGDRRDSATYVRMK+KAC+EIGV+SFGFD+  DVTQ
Sbjct:   88 GITPGLAVVLVGDRRDSATYVRMKRKACEEIGVASFGFDYASDVTQ 133          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A7R9VWH8_9STRA (Methenyltetrahydrofolate cyclohydrolase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VWH8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-16
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1
Query:   40 PGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQ 168
            PGLAV+LVG RRDS TYVRMKKKAC+E G++SFGFD+PEDV Q
Sbjct:   49 PGLAVILVGTRRDSQTYVRMKKKACEECGIASFGFDYPEDVRQ 91          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A6U3VW29_9STRA (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VW29_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.680e-16
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1
Query:   40 PGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
            PGLAV+LVG RRDS TYVRMKKKAC+E G++SFGFD+PE++TQD
Sbjct:  114 PGLAVILVGSRRDSQTYVRMKKKACEECGIASFGFDYPENITQD 157          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A7S2WQ51_9STRA (Methenyltetrahydrofolate cyclohydrolase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WQ51_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.830e-16
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   31 GPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
            G  PGLAV+LVG RRDS TYVRMKK+AC+E G++SFGFD+PE  T+D
Sbjct:   56 GKVPGLAVILVGARRDSQTYVRMKKRACEECGIASFGFDYPETATED 102          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A7S3PY06_9STRA (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY06_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.770e-16
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1
Query:   37 PPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
            PPGLAV+LVG RRDS TYVRMKKKAC+E G++SFGFDFP+ V +D
Sbjct:   31 PPGLAVILVGARRDSQTYVRMKKKACEECGIASFGFDFPDTVAED 75          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A7C3BH35_9CHLR (Bifunctional protein FolD n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BH35_9CHLR)

HSP 1 Score: 78.2 bits (191), Expect = 7.120e-16
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   10 AHVQSSGGPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
            A ++ S G  PGLA VLVGDR+DS TYVRMKKKAC E+G++SFG+D P DV+Q+
Sbjct:   24 AKIKESFGVVPGLATVLVGDRKDSQTYVRMKKKACAEVGITSFGYDLPGDVSQE 77          
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Match: A0A061R604_9CHLO (Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R604_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 7.950e-16
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   31 GPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDFPEDVTQD 171
            G  PGLAVV+VG+R+DS TYVRMKKKAC+E+G++SFG D PED+TQ+
Sbjct:   46 GKVPGLAVVIVGERKDSQTYVRMKKKACEEVGIASFGSDLPEDITQE 92          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99633.31836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC07_9PHAE1.250e-30100.00Methenyltetrahydrofolate cyclohydrolase n=2 Tax=Ec... [more]
A0A7S2V2U6_9STRA3.010e-1971.70Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Fi... [more]
A0A6V1WRV7_HETAK7.830e-1969.81Methenyltetrahydrofolate cyclohydrolase n=1 Tax=He... [more]
A0A836CNA2_9STRA5.450e-1782.61Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Tr... [more]
A0A7R9VWH8_9STRA1.050e-1679.07Methenyltetrahydrofolate cyclohydrolase (Fragment)... [more]
A0A6U3VW29_9STRA2.680e-1677.27Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Di... [more]
A0A7S2WQ51_9STRA3.830e-1670.21Methenyltetrahydrofolate cyclohydrolase (Fragment)... [more]
A0A7S3PY06_9STRA5.770e-1675.56Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Ch... [more]
A0A7C3BH35_9CHLR7.120e-1664.81Bifunctional protein FolD n=2 Tax=Chloroflexi TaxI... [more]
A0A061R604_9CHLO7.950e-1670.21Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Te... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99633contigEcto-sp8_S_contig99633:2..172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.4
Seed ortholog evalue5.5e-25
Seed eggNOG ortholog2880.D8LQ10
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.methenyltetrahydrofolate cyclohydrolase activity
EggNOG OGsCOG0190@1,KOG0089@2759
Cds size171
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145366.1317234-CDS-Ecto-sp8_S_contig99633:1..1721681145366.1317234-CDS-Ecto-sp8_S_contig99633:1..172Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99633 2..172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99633.31836.1prot_Ecto-sp8_S_contig99633.31836.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99633 2..172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99633.31836.1

>prot_Ecto-sp8_S_contig99633.31836.1 ID=prot_Ecto-sp8_S_contig99633.31836.1|Name=mRNA_Ecto-sp8_S_contig99633.31836.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=57bp
EVEAHVQSSGGPPPGLAVVLVGDRRDSATYVRMKKKACDEIGVSSFGFDF
PEDVTQD
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mRNA from alignment at Ecto-sp8_S_contig99633:2..172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99633.31836.1 ID=mRNA_Ecto-sp8_S_contig99633.31836.1|Name=mRNA_Ecto-sp8_S_contig99633.31836.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99633:2..172+ (Ectocarpus species8 EcLAC_412)
GAGGTGGAGGCGCACGTGCAGTCCTCTGGCGGGCCGCCCCCGGGGCTAGC GGTGGTTTTGGTCGGGGACAGGCGGGACTCGGCTACGTACGTCCGGATGA AGAAGAAGGCGTGCGATGAGATAGGGGTCAGCTCCTTCGGATTCGATTTC CCGGAGGACGTGACTCAGGAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99633:2..172+

>mRNA_Ecto-sp8_S_contig99633.31836.1 ID=mRNA_Ecto-sp8_S_contig99633.31836.1|Name=mRNA_Ecto-sp8_S_contig99633.31836.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99633:2..172+ (Ectocarpus species8 EcLAC_412)
GAGGTGGAGGCGCACGTGCAGTCCTCTGGCGGGCCGCCCCCGGGGCTAGC
GGTGGTTTTGGTCGGGGACAGGCGGGACTCGGCTACGTACGTCCGGATGA
AGAAGAAGGCGTGCGATGAGATAGGGGTCAGCTCCTTCGGATTCGATTTC
CCGGAGGACGTGACTCAGGAT
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