mRNA_Ecto-sp8_S_contig9959.31830.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9959.31830.1
Unique NamemRNA_Ecto-sp8_S_contig9959.31830.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: D7FHR9_ECTSI (Oxidoreductase, NAD-binding, myo-inositol 2-dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR9_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 5.160e-53
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQV+KDCGVKLMTAFQRRFDP
Sbjct:   67 VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVAKDCGVKLMTAFQRRFDP 152
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: A0A835Z516_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z516_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.260e-44
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            VT  YGVPKYT++  EVI+ PDVEAVWICSPSQFHADQIK  AKAGKHIFCEKPIATDLAGTIEA++V+KDCGVKLMTAFQRRFDP
Sbjct:   68 VTATYGVPKYTMDANEVIHHPDVEAVWICSPSQFHADQIKTCAKAGKHIFCEKPIATDLAGTIEAIKVAKDCGVKLMTAFQRRFDP 153
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: A0A835Z446_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z446_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.960e-42
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    1 VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            VTE YGVP Y+L   +VIN PDV+AVWICSPSQFHADQIKA A AGKHIFCEKPIATDLAGTIEA+Q + DCGVKLMTAFQRRFDP
Sbjct:   85 VTETYGVPAYSLNPDDVINHPDVQAVWICSPSQFHADQIKACAAAGKHIFCEKPIATDLAGTIEAIQYANDCGVKLMTAFQRRFDP 170
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: A0A835Z9N2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N2_9STRA)

HSP 1 Score: 149 bits (375), Expect = 7.420e-42
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            V   YG+P Y+L   +VIN PDV+AVWICSPSQFHADQIKA A+AGKHIFCEKPIATDLAGT+EA+QV+KDCGVKLMTAFQRRFDP
Sbjct:   54 VVATYGLPAYSLNPDDVINHPDVQAVWICSPSQFHADQIKACARAGKHIFCEKPIATDLAGTLEAIQVAKDCGVKLMTAFQRRFDP 139
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: A0A4D9CRG6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRG6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.030e-41
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            VT +YGVP YTL+G EVIN PDV+AVWICSPSQFHADQIK  AKAGKH+FCEKPIATDL GTIEA++V+ + G+KLMTAFQRRFDP
Sbjct:   68 VTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRRFDP 153
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: W7TS07_9STRA (Oxidoreductase domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS07_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.120e-40
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRR 249
            VT +YGVP YTL+G EVIN PDV+AVWICSPSQFHADQIK  AKAGKH+FCEKPIATDL GTIEA++V+ + G+KLMTAFQR+
Sbjct:   68 VTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: A0A7S2ZK78_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZK78_9RHOD)

HSP 1 Score: 132 bits (331), Expect = 1.960e-37
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    7 EKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            EKYGV +YTL   E+I+  DV+AVWIC+PSQFHADQIK +A  GKHIFCEKPIATDL GT+EAV+ +K  GVKLMTAFQRRFDP
Sbjct:   57 EKYGVERYTLNDEELISSKDVDAVWICTPSQFHADQIKMAASHGKHIFCEKPIATDLKGTLEAVEFAKSKGVKLMTAFQRRFDP 140
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: A0A7S0G389_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G389_9RHOD)

HSP 1 Score: 133 bits (334), Expect = 2.520e-37
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    7 EKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            EKYGV KYTL   E+I+  DV+AVWIC+PSQFHADQIK +A  GKHIFCEKPIATDL GT+EAV+ +K  GVKLMTAFQRRFDP
Sbjct:  101 EKYGVEKYTLSDEELISSKDVDAVWICTPSQFHADQIKMAASHGKHIFCEKPIATDLKGTLEAVEFAKSKGVKLMTAFQRRFDP 184
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BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: K0SDD0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SDD0_THAOC)

HSP 1 Score: 130 bits (328), Expect = 2.260e-34
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    7 EKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            +++GVPK+T + MEVI DPDV+AVWICSPSQ+HA+QIKA A  GKH+FCEKPIATDLA T+EA+    + GVKLMT  QRRFDP
Sbjct:   87 KQFGVPKFTADAMEVITDPDVDAVWICSPSQYHAEQIKACAANGKHVFCEKPIATDLAETVEAINACNEAGVKLMTGLQRRFDP 170
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Match: A0A7S2CX38_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CX38_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 7.480e-34
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    7 EKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP 258
            EKY +P ++ + M+VIN PDVEAVWICSPS FHADQIKA A AGKHIFCEKPIATDL  TIEA+   +  GVKLMTA QRRFDP
Sbjct:   92 EKYKLPSFSGDAMDVINHPDVEAVWICSPSSFHADQIKACAAAGKHIFCEKPIATDLPETIEAINACEQAGVKLMTALQRRFDP 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9959.31830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHR9_ECTSI5.160e-5398.84Oxidoreductase, NAD-binding, myo-inositol 2-dehydr... [more]
A0A835Z516_9STRA1.260e-4484.88Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835Z446_9STRA5.960e-4282.56Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835Z9N2_9STRA7.420e-4280.23Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A4D9CRG6_9STRA2.030e-4179.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TS07_9STRA3.120e-4077.11Oxidoreductase domain protein n=1 Tax=Nannochlorop... [more]
A0A7S2ZK78_9RHOD1.960e-3773.81Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S0G389_9RHOD2.520e-3775.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
K0SDD0_THAOC2.260e-3469.05Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2CX38_9EUKA7.480e-3472.62Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9959contigEcto-sp8_S_contig9959:3..2109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score178.3
Seed ortholog evalue1.5e-42
Seed eggNOG ortholog2880.D7FHR9
Model size258
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.D-xylose 1-dehydrogenase (NADP ) activity
EggNOG OGsCOG0673@1,KOG2741@2759
Cds size258
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145365.6515665-CDS-Ecto-sp8_S_contig9959:2..551681145365.6515665-CDS-Ecto-sp8_S_contig9959:2..55Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9959 3..55 -
1681145365.6628692-CDS-Ecto-sp8_S_contig9959:945..11111681145365.6628692-CDS-Ecto-sp8_S_contig9959:945..1111Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9959 946..1111 -
1681145365.6751816-CDS-Ecto-sp8_S_contig9959:2070..21091681145365.6751816-CDS-Ecto-sp8_S_contig9959:2070..2109Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9959 2071..2109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9959.31830.1prot_Ecto-sp8_S_contig9959.31830.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9959 3..2109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9959.31830.1

>prot_Ecto-sp8_S_contig9959.31830.1 ID=prot_Ecto-sp8_S_contig9959.31830.1|Name=mRNA_Ecto-sp8_S_contig9959.31830.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
VTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIF
CEKPIATDLAGTIEAVQVSKDCGVKLMTAFQRRFDP
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mRNA from alignment at Ecto-sp8_S_contig9959:3..2109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9959.31830.1 ID=mRNA_Ecto-sp8_S_contig9959.31830.1|Name=mRNA_Ecto-sp8_S_contig9959.31830.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2107bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9959:3..2109- (Ectocarpus species8 EcLAC_412)
GTCACCGAGAAGTACGGTGTGCCCAAGTACACCCTGGAGGTGGGTTACCG
CTGGTGCTGCTGCCGCTGCCGCTGTTGTTTTGTTGTTTTCGATTGTCGCA
ACGGCTGCTACGGCTGCTGATGATGCTGCTGCTGCTTGTTGCCTTGGTTA
TTTGTCGGTGCCCCCTTCAAGCACGCGTTGCGAGCTTGCGAGCGGAGTCG
CCAGTATATGATCGCACGCCATGAACGAGAAAGAGCCGCAGGACCAGAGT
GTTACCTATGCCATCCGCAAGGGAGTGTCCCTTCGCTCCCCCCACCCTGT
CATGTCTCATTCATGGCTAACTACCCGGAGGACATTGGTACAACCGTACG
ACGCAAGCGGTATCCATCACCTCGCCACCACGTCGTTAACCCGGGCATGG
CACCGGGGTTGGACGTCGTAAATGGCGTTGGCTCACAGATGATATGGAGC
CGTTTCAACCCGATTGTGAATAGTGTGCACTGAAGGCCTCGCCGTGAATT
TCCGCACTCAGCAGTTCATGAAGGCGTGTTCATGCGATTTTGTGATGTGG
TGCAAGCGTGTCTCCGTGTATATTCCGCCGAGTTCCCTGAAGGCGGTTGA
TGCGATCGTGATGTGGTGCAAATGTCCCTCTCTGTGCCTCCCGACACACG
GCAGGCCAGGAAAAGGTCTCACGCGATTGCGATGTGATTGTGCAAACGTG
CCCCCGTCTCTCCCTGAGTTGCCCATCCACCGCACGCTCTCATTGCGGTG
TGATGGTGCCACAATTCCCCACCCATACACTCATGGCATATTTGGTTTGA
CACCGCAAACAGTGATGACCAGCTTCTGGCTCGTCCTTGTTAAACGCAGC
CTGGACCGGCCAAAACCCGGCATATCGCTCCGTCCCGGCATCATCGTAAG
GATGCGAGGGCAATGATCTAACGAATACGGCGTGCGTTTGCGTGAGTACA
CCTCCCCGCATCCTCTCACCCGTTTCCCTTGCTACGACATCCGCACAGGG
CATGGAGGTGATCAACGATCCCGACGTGGAGGCCGTGTGGATCTGCTCCC
CCTCGCAGTTCCACGCCGACCAGATCAAGGCCTCGGCGAAGGCCGGGAAG
CACATCTTCTGCGAGAAGCCCATCGCCACCGACCTCGCGGGCACTATCGA
GGCTGTCCAGGTGTGTTTTGGGGTGTGTGTGTGGTTCGTATTTCTGGTGT
TTTTTGCCTCTCGTATGTTGTTGCTGGTTTGTCATTTTCTGGAGTCGGCA
CTGTATCTATTTCGCGGAAATTCATCGACGCCGCCCACTATATGTGGTTG
GTTTGTCTTTCAACATTTGTATTCTAAGTTGTTGGTATTTTGTGATTTCC
GTCTGTCGATACAGCAGTATCCATTTGCGGACATTCATGGAGACTGCCGT
CCAGGTGTTTGTTTTTGGGTTTTTCGGGTGTTTCGTATTGTGTAGTTTCT
TCTATTTTGTCGGTGTGGTTTGCGGTTTTCTTCAGTCGCCGTCCTCCCTC
CTTCACGGGGAGAATACAAGGACGAAGTTTTCCCACCGAGATCTCCCGTT
TTGAGTGCGGAGCAACCGGCAAACGAGGTGTTTTCCGGCGTGAGGGACGG
GTTTTTTCGTTTTTTCGACGTTACGGCACGTGCTTAATTCACTGCTCTGG
TTACCTCAAACCCGGTGTGGGGAGAGTACGTACAGTAGGCGCACGAGAGA
GTAACGCCGATGTATGCATTTGAAGCGGTTTTTGTCCTTCCACACAAGTC
ATGCATCGCTGTTGTGCAACGACATGAGCAACGGTAGTTAGTGCGGTCGC
TGATTGGTGCTGCCGGCCTAACGTGTTGTTTGGTCTCCGACGCCTCCATG
TCACTTGAGTTGATTAGGATAGATCTACAAAATGACACCTAACATTTGCA
CTTGCATGGTGTTGGGCTTCTTATTAACTCCGCTGTGTTTTTTTTCATAT
GTTGTATCCAATCCCCCTGCTTGGATAAATGCGGGTTGGGATGGGATGCG
GTCTGATGGGATGGGATGCGATGGGATGTTGACCTGGTGGGCGAACACAG
GTAGCCAAGGACTGCGGCGTGAAGCTCATGACGGCGTTCCAGCGACGCTT
CGACCCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9959:3..2109-

>mRNA_Ecto-sp8_S_contig9959.31830.1 ID=mRNA_Ecto-sp8_S_contig9959.31830.1|Name=mRNA_Ecto-sp8_S_contig9959.31830.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9959:3..2109- (Ectocarpus species8 EcLAC_412)
GTCACCGAGAAGTACGGTGTGCCCAAGTACACCCTGGAGGGCATGGAGGT
GATCAACGATCCCGACGTGGAGGCCGTGTGGATCTGCTCCCCCTCGCAGT
TCCACGCCGACCAGATCAAGGCCTCGGCGAAGGCCGGGAAGCACATCTTC
TGCGAGAAGCCCATCGCCACCGACCTCGCGGGCACTATCGAGGCTGTCCA
GGTGTCCAAGGACTGCGGCGTGAAGCTCATGACGGCGTTCCAGCGACGCT
TCGACCCT
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