mRNA_Ecto-sp8_S_contig9942.31811.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9942.31811.1
Unique NamemRNA_Ecto-sp8_S_contig9942.31811.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9942.31811.1 vs. uniprot
Match: D8LMK5_ECTSI (Similar to tripeptidylpeptidase II n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK5_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 7.030e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:    1 WADVGEDKHAKVSLAFLRRKRRLGMMVKLLSKLISSSSKTVSKEEASTARAKVFEELGWDHLVEGDKKWAVLGHPKSFALF 243
            WADVGEDKHAKVSLAFLRRKRRLGMMVKLLSKLISSSSKTVSKEEASTARAKVFEELGWDHLVEGDKKWAVLGHPKSFALF
Sbjct: 1307 WADVGEDKHAKVSLAFLRRKRRLGMMVKLLSKLISSSSKTVSKEEASTARAKVFEELGWDHLVEGDKKWAVLGHPKSFALF 1387
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BLAST of mRNA_Ecto-sp8_S_contig9942.31811.1 vs. uniprot
Match: A0A4D9D6J9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6J9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.710e-11
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 WADVGEDKHAKVSLAFLRRKRRLGMMVKLLSKLI--SSSSKTVSKEEASTARAKVFEELGWDHLVEGDKKWAVLGHPKSFALF 243
            W  + +DK+A++ L       R G+++K+L+KL+  + +S  + K+E    R KVFE LGW HL+E ++KW V+  P S++LF
Sbjct: 1295 WDSLDQDKYARLLLDRDAGYGRWGLVLKVLNKLLGDAGNSSGIDKKELYERRLKVFEHLGWTHLIENERKWRVIDCPTSYSLF 1377
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BLAST of mRNA_Ecto-sp8_S_contig9942.31811.1 vs. uniprot
Match: A0A7S2HPU4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HPU4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.640e-11
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 WADVGED-KHAKVSLAFLRRKRRLGMMVKLLSKLISSSSKT-------VSKEEASTARAKVFEELGWDHLVEGDKKWAVLGHPKSFALF 243
            W D+  + K++ ++L   RRK RLG+++ LL KLI +  +        +SK E    R+ VFEELG+DHLVE D   ++L  PK FALF
Sbjct:  631 WIDIDSNLKYSILTLERERRKNRLGLVLNLLKKLIDNDGEDTKGGICPLSKSELLKRRSSVFEELGYDHLVEYDNARSLLSSPKGFALF 719
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BLAST of mRNA_Ecto-sp8_S_contig9942.31811.1 vs. uniprot
Match: B7FXC9_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXC9_PHATC)

HSP 1 Score: 49.3 bits (116), Expect = 7.290e-5
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:    1 WADVGE-DKHAKVSLAFLRRKRRLGMMVKLLSKLISSSSKT------VSKEEASTARAKVFEELGWDHLVEGDKKWAVLGHPKSFALF 243
            W D+    K+  + L    R  R G+++KL+SKL+S   K       +SK +    RA +   LG+  LVE DKK  V+  PK++ALF
Sbjct: 1189 WVDLDSTSKYTPLVLEREERAGRYGIVLKLISKLLSKEVKEKDFVKPLSKRDLLEKRAIILGTLGYSILVEHDKKTRVIACPKAYALF 1276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9942.31811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMK5_ECTSI7.030e-45100.00Similar to tripeptidylpeptidase II n=2 Tax=Ectocar... [more]
A0A4D9D6J9_9STRA5.710e-1138.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2HPU4_9STRA7.640e-1142.70Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B7FXC9_PHATC7.290e-536.36Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9942contigEcto-sp8_S_contig9942:3..1021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score164.1
Seed ortholog evalue2.8e-38
Seed eggNOG ortholog2880.D8LMK5
Preferred nameTPP2
Model size246
KEGG koko:K01280
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004175,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008240,GO:0009507,GO:0009536,GO:0009987,GO:0010883,GO:0010884,GO:0016020,GO:0016043,GO:0016567,GO:0016604,GO:0016787,GO:0017171,GO:0019538,GO:0022607,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032446,GO:0032879,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0048518,GO:0050789,GO:0051259,GO:0051260,GO:0065003,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1905952,GO:1905954,GO:1990904
Exons2
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
EC3.4.14.10
Cds size246
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145364.2104847-CDS-Ecto-sp8_S_contig9942:2..1191681145364.2104847-CDS-Ecto-sp8_S_contig9942:2..119Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9942 3..119 +
1681145364.2261658-CDS-Ecto-sp8_S_contig9942:892..10211681145364.2261658-CDS-Ecto-sp8_S_contig9942:892..1021Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9942 893..1021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9942.31811.1prot_Ecto-sp8_S_contig9942.31811.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9942 3..1021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9942.31811.1

>prot_Ecto-sp8_S_contig9942.31811.1 ID=prot_Ecto-sp8_S_contig9942.31811.1|Name=mRNA_Ecto-sp8_S_contig9942.31811.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=82bp
WADVGEDKHAKVSLAFLRRKRRLGMMVKLLSKLISSSSKTVSKEEASTAR
AKVFEELGWDHLVEGDKKWAVLGHPKSFALF*
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mRNA from alignment at Ecto-sp8_S_contig9942:3..1021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9942.31811.1 ID=mRNA_Ecto-sp8_S_contig9942.31811.1|Name=mRNA_Ecto-sp8_S_contig9942.31811.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1019bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9942:3..1021+ (Ectocarpus species8 EcLAC_412)
TGGGCTGATGTTGGAGAAGACAAGCACGCCAAGGTGTCTCTTGCTTTCCT
CCGCCGCAAGAGGCGCCTGGGCATGATGGTCAAGCTTCTCTCCAAGCTCA
TCTCCTCCTCCTCCAAGGTATGTAGTAGACTATTTAGACCTCAAGCTTTA
TCCTTGTCCTCGATGTTTGTGTGGCGATTTTGTCATCTTGTGCCCGTTGC
TGCCTTGGTCTTCTTGCACACGGCGTGCGTTACACTCGCAATCCGACCTG
ATTTGATTTCTTTGCTGCAAGACCTGGAGATCCCGAACATGTATTTTTGT
TGTTGGCTTTAAATCGAGCCTGCTTTGTTTGTTTCAGCATGAGCTCGGCA
TGTGCACTCACCAAGTGGAGCCGACAGTCTCGACAAGGACGAGGGAGTTG
ATGAAAGGCGTGATAATGGTGTCAGGATGAGCAGTTTTTAGCATTGGCAC
GGCGTTTCCTTCAACGGCTACGCTTCTTCCCCAACCCCCTCTTTGTAATT
CTATGTTTGATATGTTGAAGCACAAGAATGTCCCACGTCGCCTAGTTTGT
TGCCAACCACATGATCCAGAGCTTCGTCCTTTGAGCTCTAATACCGCAGC
GCCCTCCTTATAGCGAACACACAACACACATAGTGTAGTGCCCACCCCAG
CATTAGAAAGTCAAATCCACCCACTACCTTCCGCCCTCGAGGACGCGTGG
TCAATGAATGGTCCAACCGCTAAGGCCCCCAACACATAAGAGTACGCCCC
CCCCCCCCCCCCTACCTTCCCCGTCCTCTCGAGGACACGATGTCGATTTT
AGAACACCTTAGGGCATGCAAAACATGTGGACCCTCCCTACCTTGCTCAC
CACGCCCCCCCCCCTCGGTTCGCACGTGTACTGCTCGTAGACGGTTTCCA
AGGAAGAGGCGTCGACAGCACGGGCCAAGGTGTTCGAGGAGCTTGGATGG
GATCACCTAGTGGAGGGAGACAAGAAGTGGGCGGTGCTGGGGCACCCGAA
ATCCTTCGCTCTGTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9942:3..1021+

>mRNA_Ecto-sp8_S_contig9942.31811.1 ID=mRNA_Ecto-sp8_S_contig9942.31811.1|Name=mRNA_Ecto-sp8_S_contig9942.31811.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9942:3..1021+ (Ectocarpus species8 EcLAC_412)
TGGGCTGATGTTGGAGAAGACAAGCACGCCAAGGTGTCTCTTGCTTTCCT
CCGCCGCAAGAGGCGCCTGGGCATGATGGTCAAGCTTCTCTCCAAGCTCA
TCTCCTCCTCCTCCAAGACGGTTTCCAAGGAAGAGGCGTCGACAGCACGG
GCCAAGGTGTTCGAGGAGCTTGGATGGGATCACCTAGTGGAGGGAGACAA
GAAGTGGGCGGTGCTGGGGCACCCGAAATCCTTCGCTCTGTTCTAG
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