mRNA_Ecto-sp8_S_contig9936.31799.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9936.31799.1
Unique NamemRNA_Ecto-sp8_S_contig9936.31799.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9936.31799.1 vs. uniprot
Match: A0A6H5LCQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ2_9PHAE)

HSP 1 Score: 619 bits (1596), Expect = 1.390e-220
Identity = 346/400 (86.50%), Postives = 364/400 (91.00%), Query Frame = 1 
Query:    1 SLFYFLLVLLVKARWHEISVLVVILNQITVSVCGFLTVRMWIYTNDARLMQGSSTILRISSVLEEKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVIADTTFWIFGRALLRAIDASLQNSRKRAMKSVLGEDRRESVLATLGGTEADEEGGRRGRCKSAGEGVERERSSRKWSSGRVRRRGSWWGGEGRDESELGGGELQAAKRKVRWAMVFCAHMSLQGYAILLFSILSKYGTSVPLILFGVQMAILPLVWHAFNIQLHAGRSQGSAIGRRSSGVDRGGRRYVVPAVGTGIGNNVGQVNTTSQQGRQXXXXXXK-HQKWIGGVGTTKWRKYGPVLGRWAVAPTETDDAAAAMDAITGETNTNARTGTTHPADGSMSESVSAPPRRGV 1197
            SLFYFLLVLLV+ARWHEISVLV+ILNQITVSVCGF TVRMWIYTND RLMQGS TILRIS+ LE+KNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIV+ADT+FWIFGRALLRAIDASLQNSRKRAM+SV G+DRRESVLA LGGTEADEEGGRRG   SAGEG  R   SRKWSSGR++RRGSWWGGEGRDESELGGGELQAAKRKVRW MVFCA MSL+GYAILL SILSKYGT+VPLILFGVQMAI PLVWHAFNIQLHAGRS+GSAIGRRSS VD+GGRRYVVPAVG GI NNVGQVNTTSQ G+ XXXXXX  HQKWIGGVGT +  KYGP L   AVAPTETDDAA A DA+TGETNTNA TGTTHPADGSM+ESVSAPP RGV
Sbjct:   12 SLFYFLLVLLVEARWHEISVLVMILNQITVSVCGFSTVRMWIYTNDTRLMQGSITILRISAALEKKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVVADTSFWIFGRALLRAIDASLQNSRKRAMESVFGKDRRESVLAVLGGTEADEEGGRRGSSISAGEGGGR--LSRKWSSGRLQRRGSWWGGEGRDESELGGGELQAAKRKVRWVMVFCALMSLEGYAILLLSILSKYGTTVPLILFGVQMAIFPLVWHAFNIQLHAGRSRGSAIGRRSSSVDQGGRRYVVPAVGGGIRNNVGQVNTTSQHGQXXXXXXXXXHQKWIGGVGTNRRGKYGPALRGHAVAPTETDDAAVATDAVTGETNTNAPTGTTHPADGSMNESVSAPPCRGV 409
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BLAST of mRNA_Ecto-sp8_S_contig9936.31799.1 vs. uniprot
Match: D7G622_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G622_ECTSI)

HSP 1 Score: 609 bits (1570), Expect = 4.050e-217
Identity = 344/388 (88.66%), Postives = 350/388 (90.21%), Query Frame = 1 
Query:    1 SLFYFLLVLLVKARWHEISVLVVILNQITVSVCGFLTVRMWIYTNDARLMQGSSTILRISSVLEEKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVIADTTFWIFGRALLRAIDASLQNSRKRAMKSVLGEDRRESVLATLGGTEADEEGGRRGRCKSAGEGVERERSSRKWSSGRVRRRGSWWGGEGRDESELGGGELQAAKRKVRWAMVFCAHMSLQGYAILLFSILSKYGTSVPLILFGVQMAILPLVWHAFNIQLHAGRSQGSAIGRRSSGVDRGGRRYVVPAVGTGIGNNVGQVNTTSQQGRQXXXXXXKHQKWIGGVGTTKWRKYGPVLGRWAVAPTETDDAAAAMDAITGETNTNARTGTTHPADGSMS 1164
            SLFYFLLVLLVKARWHEISVLVVILNQITVSVCGFLTVRMWIYTNDARLMQ SST+LRISSVLEEKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIV  DTTFWIFGRALLRAIDASLQNSR RAMKSV  EDRRESVLATLGGTEADEE GRRG             SSR WSS   RRRGSWWGGEGRDESELG GELQAAKRKVRWAM FCAHMSLQGYAILLFSI SKYGTS+PLILFGVQM I+PLVWHAFNIQLHAGRS+GSAIGRRSSGVDRGGRRYVVPAVGTGIGNNVGQVNTTSQQG  XXXXX  HQK IGGVG  KWRKYGPVL   AVAPTETD+AAAAMDA+TGETNTNARTGTTHPADGSMS
Sbjct:   12 SLFYFLLVLLVKARWHEISVLVVILNQITVSVCGFLTVRMWIYTNDARLMQASSTMLRISSVLEEKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVFTDTTFWIFGRALLRAIDASLQNSRMRAMKSVFEEDRRESVLATLGGTEADEERGRRGSGXXXXXXXXXXSSSRTWSSVGPRRRGSWWGGEGRDESELGDGELQAAKRKVRWAMGFCAHMSLQGYAILLFSIFSKYGTSMPLILFGVQMTIVPLVWHAFNIQLHAGRSRGSAIGRRSSGVDRGGRRYVVPAVGTGIGNNVGQVNTTSQQGXXXXXXX--HQKCIGGVG--KWRKYGPVLRGRAVAPTETDEAAAAMDAVTGETNTNARTGTTHPADGSMS 395
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9936.31799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCQ2_9PHAE1.390e-22086.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G622_ECTSI4.050e-21788.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9936contigEcto-sp8_S_contig9936:3..1566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1200
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1200
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145363.4624138-CDS-Ecto-sp8_S_contig9936:2..2811681145363.4624138-CDS-Ecto-sp8_S_contig9936:2..281Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9936 3..281 +
1681145363.4844012-CDS-Ecto-sp8_S_contig9936:645..15661681145363.4844012-CDS-Ecto-sp8_S_contig9936:645..1566Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9936 646..1566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9936.31799.1prot_Ecto-sp8_S_contig9936.31799.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9936 3..1566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9936.31799.1

>prot_Ecto-sp8_S_contig9936.31799.1 ID=prot_Ecto-sp8_S_contig9936.31799.1|Name=mRNA_Ecto-sp8_S_contig9936.31799.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=400bp
SLFYFLLVLLVKARWHEISVLVVILNQITVSVCGFLTVRMWIYTNDARLM
QGSSTILRISSVLEEKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVA
VTFIMLIVIADTTFWIFGRALLRAIDASLQNSRKRAMKSVLGEDRRESVL
ATLGGTEADEEGGRRGRCKSAGEGVERERSSRKWSSGRVRRRGSWWGGEG
RDESELGGGELQAAKRKVRWAMVFCAHMSLQGYAILLFSILSKYGTSVPL
ILFGVQMAILPLVWHAFNIQLHAGRSQGSAIGRRSSGVDRGGRRYVVPAV
GTGIGNNVGQVNTTSQQGRQQQQQKQKHQKWIGGVGTTKWRKYGPVLGRW
AVAPTETDDAAAAMDAITGETNTNARTGTTHPADGSMSESVSAPPRRGV*
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mRNA from alignment at Ecto-sp8_S_contig9936:3..1566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9936.31799.1 ID=mRNA_Ecto-sp8_S_contig9936.31799.1|Name=mRNA_Ecto-sp8_S_contig9936.31799.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1564bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9936:3..1566+ (Ectocarpus species8 EcLAC_412)
AGCCTCTTCTACTTCTTGCTGGTGCTCCTAGTCAAGGCCCGTTGGCACGA
GATTTCCGTCCTGGTTGTGATTCTCAACCAAATAACCGTCAGTGTGTGCG
GGTTTTTGACCGTCAGAATGTGGATCTACACCAACGACGCCCGGCTGATG
CAGGGGAGCTCCACCATTCTCAGGATCTCCTCGGTGCTGGAAGAGAAAAA
CGGACAGCGGTTGTCATACCTGGTGCTCTCGACAGGACCGGTCGTCGCGA
CGGTGCTCGCCTTGCTCGGCCGCACGGAGGTACACGAACAGTGTTGACGT
CGGGTGAAGCACTGGCACGTTTGCCGAGAGCGCGATGGTAGTTTTTTACT
GCTCTAGAGACAACAAAGACTGGTGTATGTCTAATGGGTATGGCACCGAA
GGGCATCCCTTGTCAACAAGGATTTGCGCACTACTACTGCACCTACGTTG
AGTCCGTCATTCGTTCGGCTCCTTTGACCCTAATCTTTGCCCTTTGTGGT
GGCACATGTCTCAGACGCTCGACTCTCCCTGATCGCCACAAACACCAGTA
GCAGCAAACAGCGGCAACTGCAGCGCATCTTACAATCACTGCGTACGTAC
GTATTTTGGTGTTGTGTCTCGTCTGCTACTACACTACACACAGGCGGCCG
CGAAGCTCGTGGCTGTGACGTTTATCATGCTGATTGTCATCGCCGACACA
ACCTTCTGGATTTTCGGGAGAGCGTTGCTACGGGCTATCGACGCTTCTCT
CCAAAACTCGCGAAAGAGGGCGATGAAGTCCGTATTGGGAGAGGACAGGA
GGGAGTCTGTGCTTGCGACCCTGGGTGGTACGGAGGCGGACGAAGAAGGC
GGGAGGCGCGGACGCTGTAAATCAGCAGGGGAAGGAGTGGAAAGAGAGAG
ATCGTCGAGGAAGTGGTCATCAGGGAGGGTTCGGAGAAGAGGATCGTGGT
GGGGTGGTGAGGGAAGAGACGAGTCGGAGTTAGGGGGCGGCGAACTCCAG
GCGGCCAAGAGAAAGGTTCGGTGGGCCATGGTGTTCTGCGCCCACATGAG
CCTTCAGGGGTACGCCATCCTCCTGTTCAGCATACTCAGCAAGTACGGCA
CATCCGTGCCGCTGATTCTGTTTGGTGTGCAGATGGCGATCCTACCGCTG
GTCTGGCACGCCTTCAACATACAGCTACACGCCGGACGGAGCCAGGGGTC
GGCGATCGGAAGGCGGTCGTCGGGGGTAGACCGGGGAGGGAGGCGTTACG
TTGTACCAGCCGTCGGAACCGGTATAGGAAATAACGTGGGGCAGGTGAAC
ACCACCTCGCAGCAGGGGCGGCAGCAGCAGCAACAGAAACAGAAACACCA
AAAGTGGATTGGAGGAGTCGGCACTACTAAGTGGAGAAAGTACGGGCCAG
TGCTCGGCAGGTGGGCCGTGGCCCCGACCGAGACGGACGATGCAGCAGCA
GCCATGGACGCAATCACCGGCGAGACGAACACGAACGCGCGTACGGGAAC
AACTCACCCTGCTGACGGATCAATGAGTGAATCAGTTTCAGCTCCACCTC
GCCGAGGCGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9936:3..1566+

>mRNA_Ecto-sp8_S_contig9936.31799.1 ID=mRNA_Ecto-sp8_S_contig9936.31799.1|Name=mRNA_Ecto-sp8_S_contig9936.31799.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9936:3..1566+ (Ectocarpus species8 EcLAC_412)
AGCCTCTTCTACTTCTTGCTGGTGCTCCTAGTCAAGGCCCGTTGGCACGA
GATTTCCGTCCTGGTTGTGATTCTCAACCAAATAACCGTCAGTGTGTGCG
GGTTTTTGACCGTCAGAATGTGGATCTACACCAACGACGCCCGGCTGATG
CAGGGGAGCTCCACCATTCTCAGGATCTCCTCGGTGCTGGAAGAGAAAAA
CGGACAGCGGTTGTCATACCTGGTGCTCTCGACAGGACCGGTCGTCGCGA
CGGTGCTCGCCTTGCTCGGCCGCACGGAGGCGGCCGCGAAGCTCGTGGCT
GTGACGTTTATCATGCTGATTGTCATCGCCGACACAACCTTCTGGATTTT
CGGGAGAGCGTTGCTACGGGCTATCGACGCTTCTCTCCAAAACTCGCGAA
AGAGGGCGATGAAGTCCGTATTGGGAGAGGACAGGAGGGAGTCTGTGCTT
GCGACCCTGGGTGGTACGGAGGCGGACGAAGAAGGCGGGAGGCGCGGACG
CTGTAAATCAGCAGGGGAAGGAGTGGAAAGAGAGAGATCGTCGAGGAAGT
GGTCATCAGGGAGGGTTCGGAGAAGAGGATCGTGGTGGGGTGGTGAGGGA
AGAGACGAGTCGGAGTTAGGGGGCGGCGAACTCCAGGCGGCCAAGAGAAA
GGTTCGGTGGGCCATGGTGTTCTGCGCCCACATGAGCCTTCAGGGGTACG
CCATCCTCCTGTTCAGCATACTCAGCAAGTACGGCACATCCGTGCCGCTG
ATTCTGTTTGGTGTGCAGATGGCGATCCTACCGCTGGTCTGGCACGCCTT
CAACATACAGCTACACGCCGGACGGAGCCAGGGGTCGGCGATCGGAAGGC
GGTCGTCGGGGGTAGACCGGGGAGGGAGGCGTTACGTTGTACCAGCCGTC
GGAACCGGTATAGGAAATAACGTGGGGCAGGTGAACACCACCTCGCAGCA
GGGGCGGCAGCAGCAGCAACAGAAACAGAAACACCAAAAGTGGATTGGAG
GAGTCGGCACTACTAAGTGGAGAAAGTACGGGCCAGTGCTCGGCAGGTGG
GCCGTGGCCCCGACCGAGACGGACGATGCAGCAGCAGCCATGGACGCAAT
CACCGGCGAGACGAACACGAACGCGCGTACGGGAACAACTCACCCTGCTG
ACGGATCAATGAGTGAATCAGTTTCAGCTCCACCTCGCCGAGGCGTTTAG
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