mRNA_Ecto-sp8_S_contig99353.31798.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99353.31798.1
Unique NamemRNA_Ecto-sp8_S_contig99353.31798.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: D7G618_ECTSI (Putative serine protease-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G618_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 6.010e-33
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 NLLHQTWFAMYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDYM 171
            NLLHQTWFAMYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQ+YSEEK+GRLDYM
Sbjct:  232 NLLHQTWFAMYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQVYSEEKSGRLDYM 288
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A6V2BXJ5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BXJ5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.190e-20
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 NLLHQTWFAMYSRSRG-SDDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDY 168
            NLLH+ WF +YSRSRG + DSSGFEHVFVGE K G+I+G HNWIQ+Y EEK G +DY
Sbjct:  323 NLLHKIWFDLYSRSRGKARDSSGFEHVFVGEIKDGQISGFHNWIQLYLEEKKGNVDY 379
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A7S1Z9F2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9F2_TRICV)

HSP 1 Score: 84.7 bits (208), Expect = 4.220e-19
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    4 LLHQTWFAMYSRSRGS-DDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDY 168
            LLH+ WF +Y RSRG   DSSGFEHVFVGE K GE++G HNWI  Y EEK G +DY
Sbjct:  100 LLHKIWFELYHRSRGGRPDSSGFEHVFVGEIKDGEVSGFHNWIYFYLEEKKGNVDY 155
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A7S2ULC3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULC3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.220e-18
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    4 LLHQTWFAMYSRSRGS-DDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDY 168
            LLH  WF +Y RSRG   DSSGFEHVFVGE K GE++G HNWIQ Y EEK G +DY
Sbjct:  323 LLHSMWFDLYGRSRGGRPDSSGFEHVFVGEVKNGEVSGFHNWIQFYLEEKKGTVDY 378
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A7S1U4A5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4A5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.040e-18
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    7 LHQTWFAMYSRSRG-SDDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDY 168
            L + WF MY RSRG  DDSSGFEHVF+GE K GE+TG HNW+Q Y EE+ G +DY
Sbjct:  247 LRKIWFDMYKRSRGRGDDSSGFEHVFIGEVKNGEVTGFHNWLQFYIEERKGHVDY 301
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A812CYX8_SEPPH (Uridylate-specific endoribonuclease n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812CYX8_SEPPH)

HSP 1 Score: 84.3 bits (207), Expect = 5.600e-18
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 NLLHQTWFAMYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDYM 171
            N L + WF  YSRS G+ D+SGFEHVFVGE K G ++GLH+W+Q Y+EE+  RL+YM
Sbjct:  198 NKLREMWFNTYSRSGGTQDTSGFEHVFVGELKHGSVSGLHSWLQFYNEERYNRLNYM 254
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A7S1Y3M7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3M7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.020e-18
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 LLHQTWFAMYSRSRGS-DDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDY 168
            LLH+ WF +Y RSRG  DDSSGFEHVFVGE K  +++G HNWIQ+Y EEK G L+Y
Sbjct:  329 LLHKVWFDLYRRSRGGRDDSSGFEHVFVGEIKDDKVSGFHNWIQLYLEEKKGALNY 384
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A7S2UVQ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.240e-18
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    4 LLHQTWFAMYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDY 168
            LL Q WF++Y R    +DSSGFEHVF+GESK G+ITGLHNW+Q+Y+EEK G LDY
Sbjct:  193 LLDQLWFSLYRREV-HNDSSGFEHVFIGESKAGKITGLHNWLQMYNEEKAGNLDY 246
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A397FCF0_9STRA (XendoU domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FCF0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.850e-18
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    7 LHQTWFAMYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDYM 171
            LH  WF +Y R   ++DSSGFEHVF+GE K G+++G HNWIQ+Y EEK GRLDY+
Sbjct:  137 LHDIWFGLYRREV-ANDSSGFEHVFIGEVKEGKVSGFHNWIQMYLEEKAGRLDYL 190
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BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Match: A0A8K0EP18_BRALA (ENDOU protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EP18_BRALA)

HSP 1 Score: 82.8 bits (203), Expect = 1.020e-17
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    7 LHQTWFAMYSRSRGSDDSSGFEHVFVGESK--RGEITGLHNWIQIYSEEKNGRLDY 168
            L+  WF +YSR+RG  DSSGFEHVFVGE++    E+TGLHNW+Q+Y EEK G +DY
Sbjct:  135 LYDLWFKLYSRTRGRMDSSGFEHVFVGETRGRNKEVTGLHNWVQLYLEEKKGSIDY 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99353.31798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G618_ECTSI6.010e-3396.49Putative serine protease-like protein n=2 Tax=Ecto... [more]
A0A6V2BXJ5_9STRA5.190e-2070.18Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1Z9F2_TRICV4.220e-1966.07Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2ULC3_9STRA1.220e-1867.86Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]
A0A7S1U4A5_9STRA3.040e-1865.45Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812CYX8_SEPPH5.600e-1859.65Uridylate-specific endoribonuclease n=1 Tax=Sepia ... [more]
A0A7S1Y3M7_9STRA6.020e-1866.07Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2UVQ1_9STRA6.240e-1867.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A397FCF0_9STRA9.850e-1861.82XendoU domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A8K0EP18_BRALA1.020e-1762.50ENDOU protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99353contigEcto-sp8_S_contig99353:23..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.1
Seed ortholog evalue7.8e-20
Seed eggNOG ortholog2880.D7G618
Model size174
KEGG koko:K14648
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363
Exons2
EggNOG free text desc.Poly(U)-specific
EggNOG OGsKOG2849@1,KOG2849@2759
Cds size147
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145363.4027805-CDS-Ecto-sp8_S_contig99353:22..851681145363.4027805-CDS-Ecto-sp8_S_contig99353:22..85Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99353 23..85 -
1681145363.4200447-CDS-Ecto-sp8_S_contig99353:444..5281681145363.4200447-CDS-Ecto-sp8_S_contig99353:444..528Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99353 445..528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145363.4311996-UTR-Ecto-sp8_S_contig99353:528..5551681145363.4311996-UTR-Ecto-sp8_S_contig99353:528..555Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99353 529..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99353.31798.1prot_Ecto-sp8_S_contig99353.31798.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99353 23..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99353.31798.1

>prot_Ecto-sp8_S_contig99353.31798.1 ID=prot_Ecto-sp8_S_contig99353.31798.1|Name=mRNA_Ecto-sp8_S_contig99353.31798.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=49bp
MYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQIYSEEKNGRLDYM*
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mRNA from alignment at Ecto-sp8_S_contig99353:23..555-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99353.31798.1 ID=mRNA_Ecto-sp8_S_contig99353.31798.1|Name=mRNA_Ecto-sp8_S_contig99353.31798.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=533bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99353:23..555- (Ectocarpus species8 EcLAC_412)
AACCTGCTGCACCAGACGTGGTTCGCCATGTACAGCAGGAGCCGTGGTTC
CGATGACAGCTCGGGGTTCGAACACGTGTTCGTGGGAGAGAGCAAGCGTG
GCGAGATTACGGTGAGACGATGGTGCGGGTGGTTGCTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTTTGTTGTTTTTGTTGTCGTTGTTGTTGTTGTT
GTTTTGTTGTTTTTGTTGTCGTTGTGATCGTTATGGTGGTGGTGGTGGTG
GTGGTTGCTGGTGTTTTTATTTGTTATTGTTGTTGTCGCTGCTTGCTACA
GCTGCTGCTGCAGCTGCTGCTGCTGCAGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGTTTTGGTGCTGGCTGTTGCCGGTGCCGTCCTTG
TGCTGCTCTTGTCGTTGTCCCACACCTCCAGCTTTTTTGTTTTGCTTCGT
GTTGTATTTCTGCGCCACAGGGTCTACACAACTGGATCCAGATCTACTCG
GAGGAAAAGAATGGCCGCCTGGACTACATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99353:23..555-

>mRNA_Ecto-sp8_S_contig99353.31798.1 ID=mRNA_Ecto-sp8_S_contig99353.31798.1|Name=mRNA_Ecto-sp8_S_contig99353.31798.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99353:23..555- (Ectocarpus species8 EcLAC_412)
ATGTACAGCAGGAGCCGTGGTTCCGATGACAGCTCGGGGTTCGAACACGT
GTTCGTGGGAGAGAGCAAGCGTGGCGAGATTACGGGTCTACACAACTGGA
TCCAGATCTACTCGGAGGAAAAGAATGGCCGCCTGGACTACATGTGA
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