mRNA_Ecto-sp8_S_contig99315.31792.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99315.31792.1
Unique NamemRNA_Ecto-sp8_S_contig99315.31792.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99315.31792.1 vs. uniprot
Match: D8LSD0_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.790e-22
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 DSERHRALLTKGGFFVMHGRFGNPQMRFVWMSHDLGTILWR 123
            DSERHRALLTKGGFFVMHGRFGNPQMRFVWMSHDLGTILWR
Sbjct: 1099 DSERHRALLTKGGFFVMHGRFGNPQMRFVWMSHDLGTILWR 1139
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BLAST of mRNA_Ecto-sp8_S_contig99315.31792.1 vs. uniprot
Match: A0A6H5L078_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L078_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.280e-21
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 DSERHRALLTKGGFFVMHGRFGNPQMRFVWMSHDLGTILWR 123
            DSERHRALLTKGGFFVMHGRFGNPQMRFVWMS DLGTILWR
Sbjct: 1236 DSERHRALLTKGGFFVMHGRFGNPQMRFVWMSPDLGTILWR 1276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99315.31792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSD0_ECTSI2.790e-22100.00Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L078_9PHAE6.280e-2197.56Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99315contigEcto-sp8_S_contig99315:175..300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score96.7
Seed ortholog evalue2.8e-18
Seed eggNOG ortholog2880.D8LSD0
Preferred namekinesin-F
Model size126
KEGG koko:K10397,ko:K10400
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Exons1
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Cds size126
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145362.8410122-CDS-Ecto-sp8_S_contig99315:174..3001681145362.8410122-CDS-Ecto-sp8_S_contig99315:174..300Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99315 175..300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99315.31792.1prot_Ecto-sp8_S_contig99315.31792.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99315 175..300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99315.31792.1

>prot_Ecto-sp8_S_contig99315.31792.1 ID=prot_Ecto-sp8_S_contig99315.31792.1|Name=mRNA_Ecto-sp8_S_contig99315.31792.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=42bp
DSERHRALLTKGGFFVMHGRFGNPQMRFVWMSHDLGTILWR*
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mRNA from alignment at Ecto-sp8_S_contig99315:175..300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99315.31792.1 ID=mRNA_Ecto-sp8_S_contig99315.31792.1|Name=mRNA_Ecto-sp8_S_contig99315.31792.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99315:175..300+ (Ectocarpus species8 EcLAC_412)
GACAGCGAGCGGCATCGAGCGCTGCTCACCAAGGGCGGGTTCTTCGTGAT
GCACGGAAGGTTCGGCAACCCACAGATGCGGTTCGTGTGGATGTCGCACG
ACCTGGGCACCATCCTGTGGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99315:175..300+

>mRNA_Ecto-sp8_S_contig99315.31792.1 ID=mRNA_Ecto-sp8_S_contig99315.31792.1|Name=mRNA_Ecto-sp8_S_contig99315.31792.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99315:175..300+ (Ectocarpus species8 EcLAC_412)
GACAGCGAGCGGCATCGAGCGCTGCTCACCAAGGGCGGGTTCTTCGTGAT
GCACGGAAGGTTCGGCAACCCACAGATGCGGTTCGTGTGGATGTCGCACG
ACCTGGGCACCATCCTGTGGAGGTGA
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