mRNA_Ecto-sp8_S_contig9930.31790.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9930.31790.1
Unique NamemRNA_Ecto-sp8_S_contig9930.31790.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9930.31790.1 vs. uniprot
Match: D7G869_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G869_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 3.820e-113
Identity = 209/220 (95.00%), Postives = 211/220 (95.91%), Query Frame = 1 
Query:    1 MTDKAFESEELRVFHKACREGKTLEIANAKFISPDLLNTRSVVTGRTAVHEACANGHRDALEQLLKRGADTQKTTFLGGDXXXXXXXXXXXXXXXXXXXXXXXDPNVPNKYSATSFHYAGSKPTIAKLILRYGGKVSLRDNSRKTPWDRVHEECPDNRELNKLMKVAFDREEEERARAELARVKXXXXXXXXXXXXXXXXXXXXKIEKTAAAYRQWRGGG 660
            MT KAFESEELRVFHKACREGKTLEIANAKFISPDLLNTRSVVTGRTAVHEACANGHRDALEQLLKRGADTQKTTFLGGDXXXXXXXXXXXXXXXXXXXXXXXDPNVPNKYSATSFHYAGSKPTIAKL+LRYGGKVSLRDNSRKTPWDRVHEECPDNRELNKLMK AFDREEE RARAELARVKXXXXXXXXXXXXXX      KIEKTA+AYRQWRGGG
Sbjct:    1 MTGKAFESEELRVFHKACREGKTLEIANAKFISPDLLNTRSVVTGRTAVHEACANGHRDALEQLLKRGADTQKTTFLGGDXXXXXXXXXXXXXXXXXXXXXXXDPNVPNKYSATSFHYAGSKPTIAKLLLRYGGKVSLRDNSRKTPWDRVHEECPDNRELNKLMKEAFDREEEARARAELARVKXXXXXXXXXXXXXXEARERGKIEKTASAYRQWRGGG 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9930.31790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G869_ECTSI3.820e-11395.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9930contigEcto-sp8_S_contig9930:4244..6633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score332.4
Seed ortholog evalue1.6e-88
Seed eggNOG ortholog2880.D7G869
Model size663
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_001280.1
Cds size663
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145362.7158785-CDS-Ecto-sp8_S_contig9930:4243..43751681145362.7158785-CDS-Ecto-sp8_S_contig9930:4243..4375Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9930 4244..4375 -
1681145362.729488-CDS-Ecto-sp8_S_contig9930:4694..48331681145362.729488-CDS-Ecto-sp8_S_contig9930:4694..4833Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9930 4695..4833 -
1681145362.7434862-CDS-Ecto-sp8_S_contig9930:5568..58191681145362.7434862-CDS-Ecto-sp8_S_contig9930:5568..5819Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9930 5569..5819 -
1681145362.7579696-CDS-Ecto-sp8_S_contig9930:6492..66331681145362.7579696-CDS-Ecto-sp8_S_contig9930:6492..6633Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9930 6493..6633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9930.31790.1prot_Ecto-sp8_S_contig9930.31790.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9930 4244..6633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9930.31790.1

>prot_Ecto-sp8_S_contig9930.31790.1 ID=prot_Ecto-sp8_S_contig9930.31790.1|Name=mRNA_Ecto-sp8_S_contig9930.31790.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=221bp
MTDKAFESEELRVFHKACREGKTLEIANAKFISPDLLNTRSVVTGRTAVH
EACANGHRDALEQLLKRGADTQKTTFLGGDTPLHLAVNSGNRSAVFLLLR
HGCDPNVPNKYSATSFHYAGSKPTIAKLILRYGGKVSLRDNSRKTPWDRV
HEECPDNRELNKLMKVAFDREEEERARAELARVKEEEDRANAKRREANEA
RERGKIEKTAAAYRQWRGGG*
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mRNA from alignment at Ecto-sp8_S_contig9930:4244..6633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9930.31790.1 ID=mRNA_Ecto-sp8_S_contig9930.31790.1|Name=mRNA_Ecto-sp8_S_contig9930.31790.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9930:4244..6633- (Ectocarpus species8 EcLAC_412)
ATGACGGACAAAGCCTTCGAAAGCGAAGAGCTACGTGTGTTTCACAAGGC
TTGCAGGGAAGGGAAGACGCTCGAAATCGCGAACGCAAAGTTCATCTCTC
CAGATTTGTTGAACACGCGGAGTGTTGTTACCGGGCGAACGGTGAGTTTT
GGGGTACGTACAGATTGGCCATGTTTTTGTCGGTGCAGAGGCAACAAATA
GCAAGGAGCTACCGAAAGGGCACGCTGCCGTTATCACGTTGTACGCATAG
AAAAAAACGATGGTACAGCGACTGCGGGCCCGAACTATTGTCAGATACGT
AAATTAGTAAATGCGGGTCGAGGCTCATTTTCGTAGAAGTATTTCGCCAG
CACAGTTTTTTTTAGAAGTACCATGTACATATGCACACCATACTTACATA
GTACAGGGTCCATGGCGGACCTGTGTTCCTCAACCCTACCGTCATTTTGC
AAGTCTACCTGGTATGTCTTTTCTTAACAGCAGAAAAATTCTTGCCTGCC
GTAGGCCGAACAAACTGACCTTTGTTTATTGTCAACGGGAGAATTTCATC
TACTGTACCACGAAGATAGACCACCGAGGCGTGGTTGATTCGAATCTCTT
GGCTCGATTTTCTGGGGGTTCCAGAGAGAAAGAGAGAGAGAGAGATACCT
GCAGGTCTCATAGATGACCTCGTTCTGTTGCTTCGCCGCCCCTTGAATAA
AATAAATAATGGAATAAAAGGAGTAGAAATATGTTGTGTCGGGCACGTAG
TGTACCCCGGCGAAATCCTTGATTCATCGTCTTGTGTCTCCCTGCGCGGT
ACACGCCTGCATAGGCGGTTCATGAAGCTTGCGCGAACGGACACCGGGAT
GCTCTTGAGCAGCTCTTGAAGCGAGGGGCAGACACACAAAAGACAACCTT
CCTTGGGGGGGACACACCTCTTCATTTGGCCGTGAACTCCGGCAATAGAT
CTGCTGTATTCTTGCTCCTCCGGCACGGATGCGACCCCAATGTGCCCAAC
AAGTACTCTGCGACTAGTTTCCACTACGCTGGCAGCAAACCCACAATCGC
CAAGCTCATTCTACGGTAAGTTTTCGAGATACTAGTGTTTACCCGGTGCA
GATCATACAGATTGTTATTTAACTTTTGCCTATGGGTACAAACACTGGTT
GAGTTCGACTCCGCGCATATCAATCTGCCGCGGTGTCATGGAAACTGCAC
GGCATCGCAAGCATGCAAGGCGTCAACATTCGAATCGACGCAGAGCGATT
GGGGGTTGAGACTAGTAAAGAGAAGACGCGTTCAGCCCTGACTTGGGTGT
AGTCGCATGCTGAAAACCGCCTGGTCGGTTGGAGGTAGGCCGTACCGGGC
ATGGTCTACAATAGTGTATCTGGAGCAAGTCAGATGAAACCAGCTCCTGC
TCGTAAATGGTACGGTCTACCACGTCAGTAGATAAGCTTGTTATTAGATA
AACTTGTCACAAGTTGTCGCCACTGCCTCACAAGCTAAAAGCGTTGGAAA
GAGGAACAATGCAGGGAAAAATCCACCCTGGTCACCCACCTAACTCTGTA
GGGATATGCACCATCCGAGACGTGGTTTCCTGTGTTGGATTCTCCCTCGG
GGTTGAATTTCCAGGATATGTCGTTTCGCTTGCAGCACGGCGAGATTCCC
CCCGCCCACGCCACGGGGGCAGGTACCATATGGTAATGAATATGCTCTAC
GCGGTTGGTCCGAAAAATGGAATTCGCCTCACGCCGGTCAGAGGAAGTGA
CCAACATATTCACCAGCGTCATTCCCTAACCGCTCCTACCCTCTGGAAAG
GTACGGCGGGAAAGTCTCCCTCCGAGATAACTCTAGGAAAACTCCTTGGG
ACCGTGTGCACGAGGAGTGTCCAGACAATCGAGAGCTGAACAAACTGATG
AAGGTGGCCTTCGACCGCGAGGAAGAGGAGCGTGCTAGGGTAAGAAATTA
TATTAGACGCAGCTATCTCCTAGGTTGTGAGCTTCGGCTAGCGGCCGTTC
ATCGTATCCAGAGATAACCCCCCATAACCCCAACCTCGAGGATAAACGTC
CAAGCGTTCCGTGCCAAGTTATTCAATACATACTTGTTGCTGCTGCACGT
GTCCCCGAGGTGTTTCGCACGAGGCGAGTCTCCGACATCTAATCTGCCCA
GCGTAAAGGTGCTGCCAAACCAGTAATTTGTGTGGACTGTTTTGACATTC
ATCCTGTCTGTCGTTGGGTTCTCTCCCTAAAATTCTCGTTGTTGACGCTA
TCGAAAAGGCGGAGCTCGCACGGGTGAAAGAGGAGGAAGATCGTGCCAAC
GCCAAGAGACGGGAAGCCAACGAGGCCAGGGAGAGGGGGAAGATCGAGAA
GACAGCAGCAGCGTATAGGCAATGGCGGGGGGGGGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9930:4244..6633-

>mRNA_Ecto-sp8_S_contig9930.31790.1 ID=mRNA_Ecto-sp8_S_contig9930.31790.1|Name=mRNA_Ecto-sp8_S_contig9930.31790.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9930:4244..6633- (Ectocarpus species8 EcLAC_412)
ATGACGGACAAAGCCTTCGAAAGCGAAGAGCTACGTGTGTTTCACAAGGC
TTGCAGGGAAGGGAAGACGCTCGAAATCGCGAACGCAAAGTTCATCTCTC
CAGATTTGTTGAACACGCGGAGTGTTGTTACCGGGCGAACGGCGGTTCAT
GAAGCTTGCGCGAACGGACACCGGGATGCTCTTGAGCAGCTCTTGAAGCG
AGGGGCAGACACACAAAAGACAACCTTCCTTGGGGGGGACACACCTCTTC
ATTTGGCCGTGAACTCCGGCAATAGATCTGCTGTATTCTTGCTCCTCCGG
CACGGATGCGACCCCAATGTGCCCAACAAGTACTCTGCGACTAGTTTCCA
CTACGCTGGCAGCAAACCCACAATCGCCAAGCTCATTCTACGGTACGGCG
GGAAAGTCTCCCTCCGAGATAACTCTAGGAAAACTCCTTGGGACCGTGTG
CACGAGGAGTGTCCAGACAATCGAGAGCTGAACAAACTGATGAAGGTGGC
CTTCGACCGCGAGGAAGAGGAGCGTGCTAGGGCGGAGCTCGCACGGGTGA
AAGAGGAGGAAGATCGTGCCAACGCCAAGAGACGGGAAGCCAACGAGGCC
AGGGAGAGGGGGAAGATCGAGAAGACAGCAGCAGCGTATAGGCAATGGCG
GGGGGGGGGCTAG
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