mRNA_Ecto-sp8_S_contig99228.31781.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99228.31781.1
Unique NamemRNA_Ecto-sp8_S_contig99228.31781.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: D7FZC2_ECTSI (Similar to Imprinted and ancient n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.380e-38
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:   16 SAVQVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDG-NAAGSRLAHMLAITGAQNVVVVVSRW 231
            S  QVTWVRRRLMENGKVARATHNV AWRVWDEARGVQLHDNDDDG +AAGSRLAHMLAITGAQNVVVVVSRW
Sbjct:  169 SESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRW 241
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A7S1XJK1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJK1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.840e-24
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   16 SAVQVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDGN-AAGSRLAHMLAITGAQNVVVVVSRW 231
            S  +V  VR  LM+NGK+ARATHN+ AWR++DE R V +HDNDDDG  AAG R+A +LA+TGA NVVVVVSRW
Sbjct:  196 SEAEVFAVREALMQNGKIARATHNIAAWRLFDEHRDVVIHDNDDDGETAAGGRMAELLALTGASNVVVVVSRW 268
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A7S4FB89_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FB89_CHRCT)

HSP 1 Score: 88.6 bits (218), Expect = 9.440e-20
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   16 SAVQVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDG-NAAGSRLAHMLAITGAQNVVVVVSRW 231
            +A QV W  RRL+E+ KV RATHN+ A+R +D  RGVQ+ DNDDDG NAAG RLA +L +  A NV+++VSRW
Sbjct:  132 TANQVQWAIRRLLEDRKVGRATHNIIAYRYFDAQRGVQVSDNDDDGENAAGGRLAALLELMDANNVLIIVSRW 204
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A7S2ATP6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATP6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.250e-19
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   25 QVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQ--LHDNDDDG-NAAGSRLAHMLAITGAQNVVVVVSRW 231
            QV W  RRL+EN KVARATHN+ A+R  DE+ GVQ  + DND+DG +AAG++LA MLA+  A +VVVVVSRW
Sbjct:   26 QVDWFMRRLLENRKVARATHNIMAYRFVDESLGVQSVIADNDEDGEDAAGAKLAQMLALMHANDVVVVVSRW 97
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A6H5J932_9PHAE (RWD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J932_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.290e-19
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 SAVQVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDG 153
            S  QVT VRRRLMENGKVARATHNV AWRVWDE RGVQLHDNDDDG
Sbjct:  209 SESQVTRVRRRLMENGKVARATHNVAAWRVWDEDRGVQLHDNDDDG 254
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A8J6CAX9_DIALT (RWD domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAX9_DIALT)

HSP 1 Score: 87.4 bits (215), Expect = 7.760e-19
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   16 SAVQVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDGNA-AGSRLAHMLAITGAQNVVVVVSRW 231
            S   V    R L+ + K+ARATHN  AWR+WD  RG QLHDNDDDG + AGS+LA +L + GA  V+VVVSRW
Sbjct:  184 STADVRAALRHLLADRKIARATHNQFAWRLWDATRGAQLHDNDDDGESGAGSKLAELLELMGANGVLVVVSRW 256
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A7S2N1S6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2N1S6_9DINO)

HSP 1 Score: 82.4 bits (202), Expect = 8.920e-18
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   25 QVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDG-NAAGSRLAHMLAITGAQNVVVVVSRW 231
            QV W  R ++ + KVA ATHN+ A+R +DEARGVQ+ DNDDDG + AG++LA +L++ G + V+VVVSRW
Sbjct:  114 QVQWALREVLSDRKVAVATHNMFAYRYFDEARGVQVADNDDDGEDGAGTKLAQLLSLAGCEGVLVVVSRW 183
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A813IHA4_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IHA4_POLGL)

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   25 QVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDG-NAAGSRLAHMLAITGAQNVVVVVSRW 231
            QV WV R L+E+ K+A ATHN+ A+R  D  R VQ+ DNDDDG + AGS+LA +L++ G ++V+V+VSRW
Sbjct:   29 QVDWVLRSLLEDRKIAAATHNIFAYRYQDAVRNVQVADNDDDGEDGAGSKLAELLSLAGCEDVLVMVSRW 98
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BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A8B7XSR0_ACAPL (protein IMPACT-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XSR0_ACAPL)

HSP 1 Score: 82.8 bits (203), Expect = 4.070e-17
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   16 SAVQVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDGNAA-GSRLAHMLAITGAQNVVVVVSRW 231
            +A QVT VRR L+EN K+A ATHN+ A+R++ E RG  L D D+DG AA G RL H+L I   QNV+VVVSRW
Sbjct:  204 TAQQVTQVRRMLLENRKIANATHNILAYRIYCEDRGTFLQDCDNDGEAAAGPRLLHLLEILDVQNVMVVVSRW 276
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Match: A0A813IVF3_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IVF3_POLGL)

HSP 1 Score: 80.9 bits (198), Expect = 4.710e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   25 QVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDDG-NAAGSRLAHMLAITGAQNVVVVVSRW 231
            QV WV R L+E+ K+A ATHN+ A+R  D  R VQ+ DNDDDG + AGS+LA +L++ G ++V+V+VSRW
Sbjct:  100 QVDWVLRSLLEDRKIAAATHNIFAYRYQDAVRNVQVADNDDDGEDGAGSKLAELLSLAGCEDVLVMVSRW 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99228.31781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZC2_ECTSI2.380e-3893.15Similar to Imprinted and ancient n=1 Tax=Ectocarpu... [more]
A0A7S1XJK1_9STRA9.840e-2465.75Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4FB89_CHRCT9.440e-2058.90Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2ATP6_9STRA3.250e-1962.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5J932_9PHAE4.290e-1989.13RWD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J6CAX9_DIALT7.760e-1957.53RWD domain-containing protein n=1 Tax=Diacronema l... [more]
A0A7S2N1S6_9DINO8.920e-1855.71Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A813IHA4_POLGL1.000e-1754.29Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A8B7XSR0_ACAPL4.070e-1758.90protein IMPACT-like n=1 Tax=Acanthaster planci Tax... [more]
A0A813IVF3_POLGL4.710e-1754.29Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99228contigEcto-sp8_S_contig99228:4..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score137.9
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D7FZC2
Preferred nameIMPACT
Model size234
KEGG rclassRC00024,RC00080,RC00329
KEGG koko:K00135,ko:K01476
KEGG ReactionR00551,R00713,R00714,R02401
KEGG Pathwayko00220,ko00250,ko00310,ko00330,ko00350,ko00650,ko00760,ko01100,ko01110,ko01120,ko01130,ko01230,ko05146,map00220,map00250,map00310,map00330,map00350,map00650,map00760,map01100,map01110,map01120,map01130,map01230,map05146
KEGG ModuleM00027,M00029,M00134
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000302,GO:0000902,GO:0001932,GO:0001933,GO:0003674,GO:0003779,GO:0003785,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006355,GO:0006357,GO:0006417,GO:0006446,GO:0006469,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007399,GO:0008092,GO:0008150,GO:0009267,GO:0009268,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010225,GO:0010243,GO:0010447,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010720,GO:0010941,GO:0014070,GO:0016043,GO:0016049,GO:0019207,GO:0019210,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031333,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031952,GO:0031953,GO:0032056,GO:0032058,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0033673,GO:0034198,GO:0034248,GO:0034250,GO:0034599,GO:0034614,GO:0034644,GO:0035690,GO:0040007,GO:0042149,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042594,GO:0043021,GO:0043022,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043549,GO:0043555,GO:0043558,GO:0043618,GO:0043620,GO:0044087,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045727,GO:0045859,GO:0045892,GO:0045934,GO:0045936,GO:0045948,GO:0046677,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048588,GO:0048589,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051338,GO:0051348,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0060560,GO:0060733,GO:0060992,GO:0065007,GO:0065009,GO:0070301,GO:0070887,GO:0071214,GO:0071236,GO:0071262,GO:0071264,GO:0071310,GO:0071407,GO:0071417,GO:0071467,GO:0071468,GO:0071478,GO:0071482,GO:0071494,GO:0071495,GO:0071496,GO:0071840,GO:0072755,GO:0080090,GO:0080134,GO:0080135,GO:0097201,GO:0097237,GO:0098772,GO:0104004,GO:0120036,GO:0120039,GO:1901561,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1990138,GO:1990253,GO:1990497,GO:1990904,GO:1990928,GO:2000026,GO:2000112,GO:2000113,GO:2000765,GO:2001141
Exons2
EggNOG free text desc.response to benomyl
EggNOG OGsCOG1739@1,KOG3299@2759
EC1.2.1.16,1.2.1.20,1.2.1.79,3.5.3.1
Cds size234
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145361.57319-CDS-Ecto-sp8_S_contig99228:3..1581681145361.57319-CDS-Ecto-sp8_S_contig99228:3..158Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99228 4..158 +
1681145361.5879292-CDS-Ecto-sp8_S_contig99228:448..5271681145361.5879292-CDS-Ecto-sp8_S_contig99228:448..527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99228 449..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99228.31781.1prot_Ecto-sp8_S_contig99228.31781.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99228 4..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99228.31781.1

>prot_Ecto-sp8_S_contig99228.31781.1 ID=prot_Ecto-sp8_S_contig99228.31781.1|Name=mRNA_Ecto-sp8_S_contig99228.31781.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
VCFLFSAVQVTWVRRRLMENGKVARATHNVTAWRVWDEARGVQLHDNDDD
GNAAGSRLAHMLAITGAQNVVVVVSRW*
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mRNA from alignment at Ecto-sp8_S_contig99228:4..527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99228.31781.1 ID=mRNA_Ecto-sp8_S_contig99228.31781.1|Name=mRNA_Ecto-sp8_S_contig99228.31781.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=524bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99228:4..527+ (Ectocarpus species8 EcLAC_412)
GTCTGTTTCTTGTTTTCCGCCGTACAGGTGACGTGGGTGAGGCGTCGGCT
GATGGAAAACGGTAAGGTTGCCCGCGCGACCCACAACGTGACCGCCTGGA
GAGTATGGGACGAGGCCAGGGGGGTTCAGCTGCACGACAACGACGACGAT
GGCAAGTCCCTGGACTAGATTAATTCTGGAATATCGCGAGAAACAAATCC
AGCACACAGGGCACGAAACCTTGGTTTATCCATTATCTCGAAGTTGTGTG
TCCCGCATGCGCCGAAAGTTCACCCTCGGCGCTTTCTCAACGATGCTTCT
CAGGACGACCACCGATGGGCAATGCGGCATCATTTGGCGGGCAGAACTTG
TGATGCAATACTTCCTCGACACACACAAGGCTCAACAACATTCATTCCTC
GTGTGTAACGTACTTCTGCTTTGTTCTCTCTCGCCCAGGTGAGAGTGCCG
CGGGCAGCCGACTGGCGCACATGCTGGCCATCACTGGGGCTCAGAACGTC
GTGGTGGTTGTGTCACGGTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99228:4..527+

>mRNA_Ecto-sp8_S_contig99228.31781.1 ID=mRNA_Ecto-sp8_S_contig99228.31781.1|Name=mRNA_Ecto-sp8_S_contig99228.31781.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99228:4..527+ (Ectocarpus species8 EcLAC_412)
GTCTGTTTCTTGTTTTCCGCCGTACAGGTGACGTGGGTGAGGCGTCGGCT
GATGGAAAACGGTAAGGTTGCCCGCGCGACCCACAACGTGACCGCCTGGA
GAGTATGGGACGAGGCCAGGGGGGTTCAGCTGCACGACAACGACGACGAT
GGCAATGCCGCGGGCAGCCGACTGGCGCACATGCTGGCCATCACTGGGGC
TCAGAACGTCGTGGTGGTTGTGTCACGGTGGTAA
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