mRNA_Ecto-sp8_S_contig99222.31780.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99222.31780.1
Unique NamemRNA_Ecto-sp8_S_contig99222.31780.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A6H5JYR9_9PHAE (A protein ( P-DTprotein, P-DH protein ) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYR9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.950e-28
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV
Sbjct:  636 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 689
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A835YRB8_9STRA (Trifunctional chorismate Mutase/Prephenate Dehydratase/Prephenate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.150e-18
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    4 LSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            L++TPIDT+GF SALRLMETTC+DSF+LFYGL+++N HSH  LR LR+SFA+V
Sbjct:  550 LAQTPIDTRGFQSALRLMETTCSDSFDLFYGLYKFNAHSHETLRGLRESFAQV 602
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: W7U342_9STRA (Arogenate dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U342_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.050e-15
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            GL  TPIDT+GF S L+L++ TC DSF+LFYGLF+YN HS  Q+++LR++FA V
Sbjct:  611 GLQPTPIDTRGFQSVLKLVDNTCRDSFDLFYGLFKYNKHSSDQIQRLREAFANV 664
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A7S3UT44_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT44_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 4.650e-15
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            GL RTPIDT+GF + L L+ETTC DSF+LFY L++YN +S   LRKLR+SFA V
Sbjct:  207 GLRRTPIDTKGFENVLNLVETTCLDSFDLFYSLYKYNVNSEETLRKLRESFALV 260
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A7S2UZC4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZC4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.130e-15
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            GLSRTPIDT+GF S L L++TT ADSFELFY L++YN HS   LR+LR++FA V
Sbjct:  568 GLSRTPIDTRGFQSLLGLVDTTVADSFELFYALYKYNNHSEQTLRQLREAFALV 621
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A2D4BFZ4_PYTIN (Tyrosine biosynthesis bifunctional enzyme (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFZ4_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-14
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            G+  TPIDT+GF + +RL+E TC DSFELF GL++YNP+S TQ+RK  DS  EV
Sbjct:  520 GVKNTPIDTRGFKNLVRLVEDTCKDSFELFQGLYKYNPNSATQIRKFEDSLREV 573
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: K0TRI1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TRI1_THAOC)

HSP 1 Score: 70.1 bits (170), Expect = 3.670e-14
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            GL  TPIDT+GF S LRL+ETT ADSF+LFYGL++YN +S   + KL++S  +V
Sbjct:   48 GLEATPIDTKGFQSVLRLIETTTADSFDLFYGLYKYNQNSKDIIVKLKESLGDV 101
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A7S2J800_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2J800_9DINO)

HSP 1 Score: 68.6 bits (166), Expect = 1.080e-13
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            G   TPI+T+GF S L+L++TTC DSF+LFY LF++NP+S  QL+   D+ AEV
Sbjct:   41 GARSTPINTKGFESLLQLVDTTCKDSFDLFYALFKFNPNSAQQLQAFEDAMAEV 94
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A7S2MHI8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MHI8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.510e-13
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            GL  TPIDT+GF S L+L+ TT ADSF+LFYGL++YN +SH  + KL+++   V
Sbjct:   34 GLGPTPIDTRGFESVLKLIGTTTADSFDLFYGLYKYNQNSHDTIMKLKEALDGV 87
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BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Match: A0A8J2SEQ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEQ6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.510e-13
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 LSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDSFAEV 162
            L  TPIDT+GFAS L+++ETTC DSF+LFYGL+RYN HS + L  LR + A++
Sbjct:  267 LRSTPIDTKGFASILQVVETTCDDSFDLFYGLYRYNQHSKSTLLCLRKAMADL 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99222.31780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYR9_9PHAE3.950e-28100.00A protein ( P-DTprotein, P-DH protein ) n=2 Tax=Ec... [more]
A0A835YRB8_9STRA2.150e-1871.70Trifunctional chorismate Mutase/Prephenate Dehydra... [more]
W7U342_9STRA2.050e-1561.11Arogenate dehydrogenase n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3UT44_HETAK4.650e-1564.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZC4_9STRA7.130e-1566.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BFZ4_PYTIN1.330e-1461.11Tyrosine biosynthesis bifunctional enzyme (Fragmen... [more]
K0TRI1_THAOC3.670e-1459.26Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2J800_9DINO1.080e-1355.56Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S2MHI8_9STRA6.510e-1355.56Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A8J2SEQ6_9STRA6.510e-1360.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99222contigEcto-sp8_S_contig99222:372..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.2
Seed ortholog evalue9.8e-24
Seed eggNOG ortholog2880.D8LBQ3
Preferred nameTYR1
Model size162
KEGG rclassRC00002,RC00017,RC00125
KEGG koko:K00211,ko:K00852,ko:K12586,ko:K15227
KEGG ReactionR00733,R01051,R01730,R02750
KEGG Pathwayko00030,ko00400,ko01100,ko01110,ko01130,ko01230,ko03018,map00030,map00400,map01100,map01110,map01130,map01230,map03018
KEGG ModuleM00040,M00391
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
EggNOG free text desc.prephenate dehydrogenase (NADP ) activity
EggNOG OGsCOG0077@1,COG0287@1,KOG2380@2759,KOG2797@2759
EC1.3.1.13,1.3.1.78,2.7.1.15
Cds size162
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145361.5360508-CDS-Ecto-sp8_S_contig99222:371..5331681145361.5360508-CDS-Ecto-sp8_S_contig99222:371..533Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99222 372..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99222.31780.1prot_Ecto-sp8_S_contig99222.31780.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99222 372..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99222.31780.1

>prot_Ecto-sp8_S_contig99222.31780.1 ID=prot_Ecto-sp8_S_contig99222.31780.1|Name=mRNA_Ecto-sp8_S_contig99222.31780.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
GLSRTPIDTQGFASALRLMETTCADSFELFYGLFRYNPHSHTQLRKLRDS
FAEV
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mRNA from alignment at Ecto-sp8_S_contig99222:372..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99222.31780.1 ID=mRNA_Ecto-sp8_S_contig99222.31780.1|Name=mRNA_Ecto-sp8_S_contig99222.31780.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99222:372..533- (Ectocarpus species8 EcLAC_412)
GGGCTTTCGAGGACGCCCATCGACACCCAAGGGTTCGCCAGCGCGCTTCG
ACTGATGGAAACCACCTGCGCCGACAGTTTCGAACTCTTCTACGGGTTGT
TCCGCTACAACCCGCACAGCCATACTCAGCTGCGGAAGCTGCGGGACTCG
TTCGCGGAAGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99222:372..533-

>mRNA_Ecto-sp8_S_contig99222.31780.1 ID=mRNA_Ecto-sp8_S_contig99222.31780.1|Name=mRNA_Ecto-sp8_S_contig99222.31780.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99222:372..533- (Ectocarpus species8 EcLAC_412)
GGGCTTTCGAGGACGCCCATCGACACCCAAGGGTTCGCCAGCGCGCTTCG
ACTGATGGAAACCACCTGCGCCGACAGTTTCGAACTCTTCTACGGGTTGT
TCCGCTACAACCCGCACAGCCATACTCAGCTGCGGAAGCTGCGGGACTCG
TTCGCGGAAGTG
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