mRNA_Ecto-sp8_S_contig99208.31778.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99208.31778.1
Unique NamemRNA_Ecto-sp8_S_contig99208.31778.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: A0A6H5KTI6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTI6_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.420e-40
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSFL 234
            +G+ASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMM+MAVGDGMADLVGRQ GKHKWRKGGEKSVEGSAAFVSGSFL
Sbjct:  228 SGKASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMQMAVGDGMADLVGRQLGKHKWRKGGEKSVEGSAAFVSGSFL 305          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: B0CDR8_ACAM1 (Phosphatidate cytidylyltransferase n=4 Tax=Acaryochloris TaxID=155977 RepID=B0CDR8_ACAM1)

HSP 1 Score: 77.0 bits (188), Expect = 2.360e-15
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSFL 234
            TG   E L GPL Y L  V+ T+  WRTS VG++A+M M  GDG+AD+VGR+ G HK     EKS  GSAA  +GSFL
Sbjct:  106 TGNPKEILKGPLFYGLVFVVCTIGFWRTSPVGMLALMMMCGGDGLADIVGRRLGVHKLPFSPEKSWAGSAAMFAGSFL 183          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: W7TNW7_9STRA (Phosphatidate cytidylyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNW7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.540e-15
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSFL 234
            +G  +E L GPL Y + ++L TVV WR SVVGL+A+ +MA GDGMAD+VGR++G  KW     KS  GS+AF    F+
Sbjct:  207 SGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFV 284          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: A0A835Z6B9_9STRA (Putative phytol kinase, chloroplast, carboxyterminal half n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.230e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSFL 234
            +G ASE + GPL Y L + + T++EWR S+VG++A+ +MA GDG+ADLVGR     KW     KS  GS AFV+G F+
Sbjct:  137 SGSASEAVGGPLLYVLVLAVATILEWRASLVGVMAVCQMAAGDGLADLVGRHVKGKKWWFSEHKSYVGSLAFVAGGFV 214          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: A0A7C1F0L3_9CHLR (Phosphatidate cytidylyltransferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1F0L3_9CHLR)

HSP 1 Score: 73.9 bits (180), Expect = 3.060e-14
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSFL 234
            TG   E L GPL Y +  V+ T++ WRTS VG++A+M M  GDG AD++GR+FG  K     EKS  GSAA + GSF+
Sbjct:   97 TGNPREILRGPLYYGVVFVICTIIFWRTSPVGILALMLMCGGDGFADIIGRRFGAAKLPFSREKSWAGSAAMLVGSFV 174          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: A0A845ZTW3_9CYAN (Phosphatidate cytidylyltransferase n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A845ZTW3_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.250e-14
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   16 ETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSF 231
            E L GPL Y +A V+ T++ WRTS  G++A+M M  GDG+AD+VGR++GKHK   G EKS  GSAA   GS+
Sbjct:  103 ELLRGPLYYGIAFVVCTLLFWRTSPTGILALMTMCAGDGLADVVGRRWGKHKLPFGSEKSWIGSAAMFVGSW 174          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: A0A7S2A703_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A703_TRICV)

HSP 1 Score: 73.6 bits (179), Expect = 3.470e-14
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGK-HKWRKGGEKSVEGSAAF-VSGSFL 234
            +G ASE L GPL Y + +   T++ WR S++G+ A+  MA GDGMAD++GR+FG+ +KW    +KS+ GSAAF +SG+ +
Sbjct:   80 SGSASEALGGPLLYCIVLFFSTLIFWRDSLIGVAAVSVMAAGDGMADIIGRRFGRGNKWWFSNDKSIAGSAAFAISGAVV 159          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: A0A8J6WNX6_9CYAN (Phosphatidate cytidylyltransferase n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6WNX6_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.580e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    4 GRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSF 231
            G+ +E L GPL Y +A +L TV+ WR S +G++A+M M  GDG+AD+VGR+ GKHK      KS  GS A   GSF
Sbjct:  107 GKPAEILRGPLYYGIAFILCTVLFWRNSPIGILALMLMCGGDGLADIVGRRLGKHKLPFSSHKSWAGSTAMFLGSF 182          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: A0A7S2A6U9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6U9_TRICV)

HSP 1 Score: 73.6 bits (179), Expect = 1.570e-13
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGK-HKWRKGGEKSVEGSAAF-VSGSFL 234
            +G ASE L GPL Y + +   T++ WR S++G+ A+  MA GDGMAD++GR+FG+ +KW    +KS+ GSAAF +SG+ +
Sbjct:  274 SGSASEALGGPLLYCIVLFFSTLIFWRDSLIGVAAVSVMAAGDGMADIIGRRFGRGNKWWFSNDKSIAGSAAFAISGAVV 353          
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Match: UPI001997DC9E (Phosphatidate cytidylyltransferase n=1 Tax=Cyanobacteria bacterium FACHB-63 TaxID=2692766 RepID=UPI001997DC9E)

HSP 1 Score: 70.9 bits (172), Expect = 4.510e-13
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVGRQFGKHKWRKGGEKSVEGSAAFVSGSF 231
            TG+ +E L GPL Y +   + T+V WR S +G++A+M +  GDG+AD+VGR+FG HK     +KS  GS A   GSF
Sbjct:   95 TGKPAEILRGPLYYGIVFTVCTIVFWRHSPIGILALMILCGGDGLADIVGRRFGSHKLFFNAQKSWAGSLAMFVGSF 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99208.31778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI6_9PHAE3.420e-4094.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B0CDR8_ACAM12.360e-1553.85Phosphatidate cytidylyltransferase n=4 Tax=Acaryoc... [more]
W7TNW7_9STRA2.540e-1551.28Phosphatidate cytidylyltransferase n=3 Tax=Monodop... [more]
A0A835Z6B9_9STRA5.230e-1550.00Putative phytol kinase, chloroplast, carboxytermin... [more]
A0A7C1F0L3_9CHLR3.060e-1450.00Phosphatidate cytidylyltransferase n=1 Tax=Chlorof... [more]
A0A845ZTW3_9CYAN3.250e-1454.17Phosphatidate cytidylyltransferase n=1 Tax=Leptoly... [more]
A0A7S2A703_TRICV3.470e-1447.50Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A8J6WNX6_9CYAN3.580e-1450.00Phosphatidate cytidylyltransferase n=3 Tax=unclass... [more]
A0A7S2A6U9_TRICV1.570e-1347.50Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
UPI001997DC9E4.510e-1346.75Phosphatidate cytidylyltransferase n=1 Tax=Cyanoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99208contigEcto-sp8_S_contig99208:3..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.7
Seed ortholog evalue4.4e-33
Seed eggNOG ortholog2880.D7G296
Preferred nameVTE5
Model size234
KEGG rclassRC00002,RC00017
KEGG koko:K15892,ko:K18678
KEGG ReactionR09849,R10659
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0010276,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Exons2
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
EC2.7.1.182,2.7.1.216
Cds size234
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145361.3416536-CDS-Ecto-sp8_S_contig99208:2..1221681145361.3416536-CDS-Ecto-sp8_S_contig99208:2..122Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99208 3..122 -
1681145361.3554685-CDS-Ecto-sp8_S_contig99208:428..5421681145361.3554685-CDS-Ecto-sp8_S_contig99208:428..542Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99208 429..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99208.31778.1prot_Ecto-sp8_S_contig99208.31778.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99208 3..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99208.31778.1

>prot_Ecto-sp8_S_contig99208.31778.1 ID=prot_Ecto-sp8_S_contig99208.31778.1|Name=mRNA_Ecto-sp8_S_contig99208.31778.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
TGRASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMKMAVGDGMADLVG
RQFGKHKWRKGGEKSVEGSAAFVSGSFL
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mRNA from alignment at Ecto-sp8_S_contig99208:3..542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99208.31778.1 ID=mRNA_Ecto-sp8_S_contig99208.31778.1|Name=mRNA_Ecto-sp8_S_contig99208.31778.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=540bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99208:3..542- (Ectocarpus species8 EcLAC_412)
ACGGGCAGGGCGTCCGAGACGCTGGATGGGCCGCTCAAGTACTCTCTGGC GATCGTGCTCATCACTGTCGTGGAGTGGCGGACTTCCGTGGTTGGGCTTA TCGCCATGATGAAGGTACATATGCGCCAGCGGAATATATACGCATGTGGT GCTGCTTCCCGAAGATGGGAGAGGCCGCCGCGTTGTGACCCTTGCTCCAC GGAGCAGCCTCGCGGCCGTCTTACCAAGAAGTCCGGATGACGGCCCCCCT GTTTTGTGAGACGCTGTCATGTGCAACCGTAACACGGCGGGCTTACGGGA TTCGGCTAAACCGCATAAACACATTGCCGACTGATAACCCCAATCTGTCC CCGCAAGCACGATTTTCAACTGAGTGCCTCCCCTACTCACACGCTCCGTG TTTGATGCGTATTGCTCAAGATGGCGGTCGGCGATGGGATGGCGGACTTG GTTGGGCGGCAGTTCGGGAAGCACAAGTGGCGAAAGGGGGGCGAGAAGAG CGTGGAGGGCTCGGCCGCTTTCGTCTCGGGATCATTCCTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99208:3..542-

>mRNA_Ecto-sp8_S_contig99208.31778.1 ID=mRNA_Ecto-sp8_S_contig99208.31778.1|Name=mRNA_Ecto-sp8_S_contig99208.31778.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99208:3..542- (Ectocarpus species8 EcLAC_412)
ACGGGCAGGGCGTCCGAGACGCTGGATGGGCCGCTCAAGTACTCTCTGGC
GATCGTGCTCATCACTGTCGTGGAGTGGCGGACTTCCGTGGTTGGGCTTA
TCGCCATGATGAAGATGGCGGTCGGCGATGGGATGGCGGACTTGGTTGGG
CGGCAGTTCGGGAAGCACAAGTGGCGAAAGGGGGGCGAGAAGAGCGTGGA
GGGCTCGGCCGCTTTCGTCTCGGGATCATTCCTT
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