mRNA_Ecto-sp8_S_contig99134.31769.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99134.31769.1
Unique NamemRNA_Ecto-sp8_S_contig99134.31769.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: UPI000C782EA2 (eukaryotic translation initiation factor 1A, X-chromosomal-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C782EA2)

HSP 1 Score: 255 bits (651), Expect = 4.330e-85
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEF 405
            MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN SDIVL+GLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGD+DDDIEF
Sbjct:    1 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQSDIVLIGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDMDDDIEF 132
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: C1BTM3_LEPSM (Eukaryotic translation initiation factor 4C n=5 Tax=Caligidae TaxID=72034 RepID=C1BTM3_LEPSM)

HSP 1 Score: 237 bits (604), Expect = 5.320e-78
Identity = 128/156 (82.05%), Postives = 137/156 (87.82%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEF---GSDCDSDDSGSGDDANDIDGI 468
            MPKNKGKGGKNRRRGKNENEGLKRELVF+EDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN SDI+L+GLRDYQDAKADVILKYSADEARNLKSYGEFPE+VKINETV F    +DD+IEF   GS        S ++ N+IDGI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEGLKRELVFREDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQSDIILVGLRDYQDAKADVILKYSADEARNLKSYGEFPETVKINETVTFGEEGIDDEIEFDVVGS--------SEEETNEIDGI 148
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: E9H4Z9_DAPPU (Eukaryotic translation initiation factor 4C n=2 Tax=Daphnia TaxID=6668 RepID=E9H4Z9_DAPPU)

HSP 1 Score: 234 bits (598), Expect = 4.220e-77
Identity = 124/152 (81.58%), Postives = 134/152 (88.16%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSG--DDANDI 459
            MPKNKGKGGKNRRRGKNENE  KREL+FKEDGQEYAQVTKMLGNGRLEA+CFDG KRLCHIRGKLRKKVWIN  DI+L+GLRDYQDAKADVILKY+ADEARNLK+YGE PE+VK+ +TV+FV   LDDDIEFG     DDSGSG  DD NDI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEAEKRELIFKEDGQEYAQVTKMLGNGRLEALCFDGTKRLCHIRGKLRKKVWINQGDIILVGLRDYQDAKADVILKYNADEARNLKTYGEIPETVKVTDTVNFVDDGLDDDIEFG-----DDSGSGEDDDINDI 147
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: Q9VEA1_DROME (Eukaryotic translation initiation factor 4C n=48 Tax=Dicondylia TaxID=85512 RepID=Q9VEA1_DROME)

HSP 1 Score: 229 bits (583), Expect = 8.420e-75
Identity = 120/153 (78.43%), Postives = 132/153 (86.27%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSGDDANDIDGI 468
            MPKNKGKGGKNRRRGKNENE  KREL+FKED QEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN  DI+L+GLRDYQD+KADVILKY+ DEARNLK+YGEFPESV+INETV FV    D+DIEFG +  S+D     DA+ +D I
Sbjct:    1 MPKNKGKGGKNRRRGKNENEFEKRELIFKEDQQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDYQDSKADVILKYTPDEARNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSED-----DADSVDNI 148
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: Q9NJB4_DROME (Eukaryotic translation initiation factor 4C n=81 Tax=cellular organisms TaxID=131567 RepID=Q9NJB4_DROME)

HSP 1 Score: 227 bits (579), Expect = 3.430e-74
Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSGDDANDIDGI 468
            MPKNKGKGGKNRRRGKNENE  KREL+FKED QEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN  +I+L+GLRDYQD+KADVILKY+ DEARNLK+YGEFPESV+INETV FV    D+DIEFG +  S+D     DA+ +D I
Sbjct:    1 MPKNKGKGGKNRRRGKNENEFEKRELIFKEDQQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGEIILVGLRDYQDSKADVILKYTPDEARNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSED-----DADSVDNI 148
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: A0A833RXT6_9HYME (Eukaryotic translation initiation factor 4C n=3 Tax=Neoptera TaxID=33340 RepID=A0A833RXT6_9HYME)

HSP 1 Score: 223 bits (567), Expect = 3.790e-72
Identity = 115/148 (77.70%), Postives = 128/148 (86.49%), Query Frame = 1 
Query:   25 GKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSGDDANDIDGI 468
            GKGGKNRRRGKNENE  KRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN  DI+L+GLRDYQDAKADVILKY++DEARNLK+YGEFPE+V+IN+TV FV    D+DIEFG +       S DD +D+D +
Sbjct:   13 GKGGKNRRRGKNENETEKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTSDEARNLKTYGEFPETVRINDTVTFVEDGFDEDIEFGDEI------SDDDEDDVDNV 154
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: A0A6J2YDM2_SITOR (Eukaryotic translation initiation factor 4C n=31 Tax=Pterygota TaxID=7496 RepID=A0A6J2YDM2_SITOR)

HSP 1 Score: 218 bits (555), Expect = 1.550e-70
Identity = 117/153 (76.47%), Postives = 126/153 (82.35%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSGDDANDIDGI 468
            MPKNKGKGGKN           KREL+FKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN  DI+L+GLRDYQDAKADVILKY+ DEARNLK+YGEFPESV+INETV FV    D+DIEFG     DD  SGDDA+ +DGI
Sbjct:    1 MPKNKGKGGKNXXXXXXXXXTEKRELIFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPESVRINETVTFVEDGFDEDIEFG-----DDISSGDDADPVDGI 148
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: J3JTV9_DENPD (Eukaryotic translation initiation factor 4C n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JTV9_DENPD)

HSP 1 Score: 218 bits (555), Expect = 1.550e-70
Identity = 117/153 (76.47%), Postives = 127/153 (83.01%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSGDDANDIDGI 468
            MPKNKGKGGKN           KREL+FKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN  DI+L+GLRDYQDAKADVILKY+ DEARNLK+YGEFPESVKI++ V FV  DLD+DIEFG     DD  SGDDA+ +DGI
Sbjct:    1 MPKNKGKGGKNXXXXXXXXXTEKRELIFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPESVKISDYVTFVENDLDEDIEFG-----DDVSSGDDADPVDGI 148
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: UPI000BA7FC93 (eukaryotic translation initiation factor 1A, Y-chromosomal-like isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7FC93)

HSP 1 Score: 217 bits (552), Expect = 4.740e-70
Identity = 111/139 (79.86%), Postives = 120/139 (86.33%), Query Frame = 1 
Query:   10 MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSD 426
            MPKNKGKGGKNRRRGKNENE  KRELVFK+DGQEYAQV KMLGNGRLEA+CFDGVKRLCHIRGKLRKKVWIN  DI+L+GLRDYQDAKADVILKY+ DEARNLKSYGE PE  KIN+TV F   ++DD I+F  D   D
Sbjct:    1 MPKNKGKGGKNRRRGKNENEADKRELVFKDDGQEYAQVVKMLGNGRLEAICFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYNPDEARNLKSYGELPEHAKINDTVTFGEEEVDDIIDFNDDVSED 139
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BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Match: A0A836G436_9HYME (28S ribosomal protein S31, mitochondrial (Fragment) n=1 Tax=Acromyrmex heyeri TaxID=230685 RepID=A0A836G436_9HYME)

HSP 1 Score: 223 bits (567), Expect = 2.010e-69
Identity = 115/148 (77.70%), Postives = 128/148 (86.49%), Query Frame = 1 
Query:   25 GKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEARNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSGDDANDIDGI 468
            GKGGKNRRRGKNENE  KRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWIN  DI+L+GLRDYQDAKADVILKY++DEARNLK+YGEFPE+V+IN+TV FV    D+DIEFG +       S DD +D+D +
Sbjct:  203 GKGGKNRRRGKNENETEKRELVFKEDGQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTSDEARNLKTYGEFPETVRINDTVTFVEDGFDEDIEFGDEI------SDDDEDDVDNV 344
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99134.31769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C782EA24.330e-8597.73eukaryotic translation initiation factor 1A, X-chr... [more]
C1BTM3_LEPSM5.320e-7882.05Eukaryotic translation initiation factor 4C n=5 Ta... [more]
E9H4Z9_DAPPU4.220e-7781.58Eukaryotic translation initiation factor 4C n=2 Ta... [more]
Q9VEA1_DROME8.420e-7578.43Eukaryotic translation initiation factor 4C n=48 T... [more]
Q9NJB4_DROME3.430e-7477.78Eukaryotic translation initiation factor 4C n=81 T... [more]
A0A833RXT6_9HYME3.790e-7277.70Eukaryotic translation initiation factor 4C n=3 Ta... [more]
A0A6J2YDM2_SITOR1.550e-7076.47Eukaryotic translation initiation factor 4C n=31 T... [more]
J3JTV9_DENPD1.550e-7076.47Eukaryotic translation initiation factor 4C n=1 Ta... [more]
UPI000BA7FC934.740e-7079.86eukaryotic translation initiation factor 1A, Y-chr... [more]
A0A836G436_9HYME2.010e-6977.7028S ribosomal protein S31, mitochondrial (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99134contigEcto-sp8_S_contig99134:79..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score238.0
Seed ortholog evalue2.9e-60
Seed eggNOG ortholog6669.EFX73236
Preferred nameeIF-1A
Model size471
KEGG koko:K03236,ko:K17410
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016282,GO:0019538,GO:0023052,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070993,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits
EggNOG OGs3A1R5@33154,3BG78@33208,3CVCE@33213,41WQT@6656,COG0361@1,KOG3403@2759
Cds size462
COG Functional cat.J
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko03011,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.3578923-CDS-Ecto-sp8_S_contig99134:78..5401681145360.3578923-CDS-Ecto-sp8_S_contig99134:78..540Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99134 79..540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145360.3852205-UTR-Ecto-sp8_S_contig99134:540..5491681145360.3852205-UTR-Ecto-sp8_S_contig99134:540..549Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99134 541..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99134.31769.1prot_Ecto-sp8_S_contig99134.31769.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99134 79..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99134.31769.1

>prot_Ecto-sp8_S_contig99134.31769.1 ID=prot_Ecto-sp8_S_contig99134.31769.1|Name=mRNA_Ecto-sp8_S_contig99134.31769.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=154bp
MPKNKGKGGKNRRRGKNENEGLKRELVFKEDGQEYAQVTKMLGNGRLEAM
CFDGVKRLCHIRGKLRKKVWINHSDIVLLGLRDYQDAKADVILKYSADEA
RNLKSYGEFPESVKINETVDFVGGDLDDDIEFGSDCDSDDSGSGDDANDI
DGI*
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mRNA from alignment at Ecto-sp8_S_contig99134:79..549-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99134.31769.1 ID=mRNA_Ecto-sp8_S_contig99134.31769.1|Name=mRNA_Ecto-sp8_S_contig99134.31769.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=471bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99134:79..549- (Ectocarpus species8 EcLAC_412)
AAAGACAAAATGCCTAAAAATAAAGGAAAGGGAGGAAAGAACAGGAGGAG
GGGGAAGAACGAGAACGAGGGGCTGAAGAGGGAGCTGGTCTTCAAGGAGG
ACGGCCAGGAGTATGCCCAGGTGACTAAAATGTTGGGTAATGGAAGGTTG
GAGGCCATGTGCTTCGATGGGGTGAAGCGTCTCTGCCACATCAGAGGGAA
GCTTCGCAAGAAGGTCTGGATCAACCATTCCGACATCGTCCTCCTCGGGC
TCAGGGACTACCAGGATGCCAAGGCTGATGTTATCCTGAAGTACTCGGCC
GATGAAGCGAGAAACTTGAAATCTTACGGAGAATTTCCTGAGTCGGTCAA
GATCAACGAGACGGTGGACTTCGTCGGGGGCGACCTGGACGATGACATCG
AGTTCGGCAGTGATTGCGACAGTGACGACTCGGGTTCTGGTGATGATGCC
AACGACATAGACGGAATTTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99134:79..549-

>mRNA_Ecto-sp8_S_contig99134.31769.1 ID=mRNA_Ecto-sp8_S_contig99134.31769.1|Name=mRNA_Ecto-sp8_S_contig99134.31769.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99134:79..549- (Ectocarpus species8 EcLAC_412)
ATGCCTAAAAATAAAGGAAAGGGAGGAAAGAACAGGAGGAGGGGGAAGAA
CGAGAACGAGGGGCTGAAGAGGGAGCTGGTCTTCAAGGAGGACGGCCAGG
AGTATGCCCAGGTGACTAAAATGTTGGGTAATGGAAGGTTGGAGGCCATG
TGCTTCGATGGGGTGAAGCGTCTCTGCCACATCAGAGGGAAGCTTCGCAA
GAAGGTCTGGATCAACCATTCCGACATCGTCCTCCTCGGGCTCAGGGACT
ACCAGGATGCCAAGGCTGATGTTATCCTGAAGTACTCGGCCGATGAAGCG
AGAAACTTGAAATCTTACGGAGAATTTCCTGAGTCGGTCAAGATCAACGA
GACGGTGGACTTCGTCGGGGGCGACCTGGACGATGACATCGAGTTCGGCA
GTGATTGCGACAGTGACGACTCGGGTTCTGGTGATGATGCCAACGACATA
GACGGAATTTAA
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